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GT19198

CSHL Arabidopsis genetrap mutant lines

Original: GT19198

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19198

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16812157 [Map]; Strand: c
      • AT3G45775.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT19198 - 3-prime edge 
    TTTACCGGAC CGTTACCGAC CGTTTTCATC CCTAAAGGAA CCCGATACGG 
    ACCCCATAGA TCAACGTGAA TCAACTCAAA AATCATCGAA GTTTTATTCA 
    TACTAATCGG AAAACAATCT CGTGTTTGCT TAGCGCGAAG ACAGACATCG 
    CATGCTTTAT TCAAATTATC AAAAGAAACA GAACTTGAAA CAGAAGGAAG 
    CAATCCTACA ACTTTTGCAG AAGGATGACC CATCCTATTA TGCCACAGCT 
    CAAACGACTT ATCGTCCCTC GTTGTGACTG CTGCTGCGAT CTCCGTACTG 
    CGAAAGTGAA AGGTTCCTCC TATTCTCTTA CCAGCTCCAG TCACCATCTT 
    CGAAACTCGG TCCTGAACCA CAAGAAAACT ATCAGCCATC TGAACCACAC 
    AACTGTTCTC ATCCATCAAC TGTCCCACAG AAATCAAATC AGATTTGAAA 
    CCTTCCACAA AGTAAACCGA CTTCATAACC AGATTAGAAC CAAGACGTAT 
    TGATCCTTCT TTAAACGAAA CTTGTTCTCT TCCATCAGCT AAAATAATCA 
    AGACAGGTGA CATATTTCTA ACATTTGACA GAGCATCCAT TCTGCCCGTT 
    AAATGGTGAG AAGCACCTGT GTCCATAATC CAAGAGGGAA ACGATAACTT 
    ACCAGTGAGT TTCTCGGTGG TGTTCTCCTT GCCAGCATTG AGAATGGACT 
    TAATTGTGCG CCATTGTTGC TCACTCAGAC CGCTTACTGC ATCACGATCT 
    TGATCAGTAT GAACATGGTT CACTTGTTCT TGGTTTTGAT TCTCAATGCT 
    TGGAACATTC ACCCGATTAG CATAAGTCAT TTGTCCTTTG CCTCTTCCTC 
    CACTCGAGCT CGCTCCACCG CGACCTCTG

AT3G45775.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 9.5e-189 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)
Link
InterPro Scan - TAIR