1. Home
  2. Mutant Lines
  3. GT19206

GT19206

CSHL Arabidopsis genetrap mutant lines

Original: GT19206

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19206

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 122852 [Map]; Strand: c
      • AT2G01220.1 - [+] show detail - Nucleotidylyl transferase superfamily protein
        Distance: -424; Region: promoter
      • AT2G01220.2 - [+] show detail - Nucleotidylyl transferase superfamily protein
        Distance: -424; Region: promoter
    Flanking Genome Sequence: GT19206 - 3-prime edge 
    TAACTTGACA TGTTTTTTCG CAAGAAGAAG ATTCATATAA TAAACGATTA 
    TAAATGTGGT TTAGATTTAG CTAAAGCCTT AAAAGGGTAA AAGGAGAGGA 
    CATGTGTACA AACATTAGTC CGGCCCTTAT TGTCGTTATG GTGATACGAT 
    AAAATTGTCG ATAAGTAGAC TTGGTGAAGT GTGATGTCTC CTAGTTTCTT 
    AGGATAGAGA GCCCCAAAAA AACCTAAACC TAAACCCAGA GAGAGTGTGC 
    CAGAGTGGGC CTATTTTCTC CTCACGGACT AACGGCGACG ACTCCGAGGC 
    TACATACTAG TAAATCAAAC AACTTGGGTT TTAGTGCAAT ATAAAATTAT 
    TTTGGGCATA AATTGTAATT ACGGAAACTA TTGGGCATAA ATTGTAATTA 
    TGGAAACGTT TGGGCATGAA TTGTTATTAC GGAAACTGTT GGGGATAAAT 
    TGAAATTACG GAAACTTTGG GGGGCTTAAT TTGGCTTTTT GCCGGCAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19227259 [Map]; Strand: w
      • AT2G46770.1 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
        Distance: -4343; Region: intergenic
      • AT2G46780.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -2034; Region: intergenic
    Flanking Genome Sequence: GT19206 - 5-prime edge 
    CTCTTTCTCC CTGGGAGAAG CCATAAAATG TGACACTCCG TAAACTCCGT 
    TATATTACAT ATGAGATAGC GTGATTTCTG AATACATAAA TTTAC

AT2G01220.1

Model type
Protein coding
Short Description
Nucleotidylyl transferase superfamily protein
Computational Description
Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT3G27610.2); Has 432 Blast hits to 425 proteins in 57 species: Archae - 6; Bacteria - 30; Metazoa - 0; Fungi - 7; Plants - 78; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01220.2

Model type
Protein coding
Short Description
Nucleotidylyl transferase superfamily protein
Computational Description
Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT3G27610.1); Has 429 Blast hits to 422 proteins in 57 species: Archae - 6; Bacteria - 30; Metazoa - 0; Fungi - 7; Plants - 76; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46770.1

Model type
Protein coding
Short Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator Summary
NAC transcription factor NST1. NST1 and NST2 are redundant in regulating secondary wall thickening in anther walls and siliques. NST1 promoter was detected in various tissues in which lignified secondary walls develop.
Computational Description
EMBRYO DEFECTIVE 2301 (EMB2301); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain protein 66 (TAIR:AT3G61910.1); Has 2975 Blast hits to 2968 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2973; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46780.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G33470.2); Has 50 Blast hits to 50 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR