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GT19217

CSHL Arabidopsis genetrap mutant lines

Original: GT19217

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19217

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 68202 [Map]; Strand: c
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 2723; Region: intergenic
      • AT4G00165.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 1071; Region: intergenic
    Flanking Genome Sequence: GT19217 - 3-prime edge 
    GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAATC ACCACCTTCC 
    AAAAAATTTA TCACTTTATG GGAGAAGTCG ATTCAATCTC ATCTACGAAT 
    TGTTCCCATT AATGCAAAAA TTCGATTCAG CGTTTTAAGA CAGCAAGCAA 
    CACCCAATAA TAGAAACTTC AAACCCCATT GATTGTTTTC ACATGGAGAC 
    CAACTAACCA ACAACNNNNC TTNATTTATA TTGAAGGATG ACGTGTTAGA 
    GTTTGTATGC ATATAACCAT ATATAAATGA TTGCGTCGTT CATTTTGTAT 
    AAGATTTTAG GATAATGACT AGTTAGATTA GACAAAAATT GATCAATTAT 
    TATTAGGAGA TCACATGGGA CTGATAAGGA TAAAGAAAAA TAGAGAAGAT 
    TTCTTCATCT CATTAGAGCC AAAGTAATAA TAATTATGAT AAAAAAACCA 
    ACCAAGATCG GCGGGAAGTA ATTAACAATT ACCACAATCA TTCATCAATT 
    ACTTGGTTAC GTGATTTAAG ACAAAGATTT AGGACTGTAT TATTCAAATT 
    AACCACAACA TAACTCTTTT TTGCAAATAT TGCATAAACA AATACAATAA 
    CACAAGGCAC TATCTCTGAG TCTCGGAACG TTCTTTCTTT GATTAAGGGA 
    GACAGAGCAC ACATAATAAT ATCAGCAGAC GAATCCCTGA GGAACATTTT 
    TGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 60919 [Map]; Strand: c
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: -1633; Region: intergenic
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: -2491; Region: intergenic
    Flanking Genome Sequence: GT19217 - 5-prime edge 
    CCTACTTTAT CCCTGAGTGG GGTTGGGTGT GTTGCTTGAG ACGAGAGAAA 
    AGAACATGTT TTCACCACGT AACTTACTTC ACCCTCACGA AGTTAACACA 
    CACATATATC TATAGTATTC CAACATACCA AATATTATAT TAATATATCA 
    TGAAACTTGA AAATGTGTTG GTGTATTGGT CCGATTTTTA ATTTGTCTTC 
    AAGATCAATT ACCCACCTCT CTTTTTTTTT GTTTTTTTTT TTTTTTTTTT 
    TTGTAAACCA TTGTATCATT TTATAATAAA ATACTGACTT TCCCATATAT 
    GTTATTGACC CTGATGGCTT AATTGTTTCA GACATATAGG TTGATGATGA 
    GGCTTCTTTA AAAAAAAAAA ACACCGATCG TGTTTTACTT CGATCAGTAG 
    ATTGTTTCTT GAAAAAAAAA ATCTAGAAAC AAAAGTATGA ATATTTTTTT 
    TTTGTTAGAA AAATTAAGAA AATTAAGATA GATATTGCAT ACCTTTTTCC 
    CCCATTATAG TTCTGATTAG AACACTTAAT AAACTCCCAC AGCTGATTAA 
    CAACCACATA TTTTTGAAAA TCTATCGCAA TTTAGTGATT TAAATTTGAG 
    ATCCATGACA AA

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00160.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00165.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: N-terminal protein myristoylation, lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G45180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR