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GT19219

CSHL Arabidopsis genetrap mutant lines

Original: GT19219

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19219

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT19219 - 3-prime edge 
    GGGGGGGGGG GGGGGGGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 178417 [Map]; Strand: c
      • AT2G01410.1 - [+] show detail - NHL domain-containing protein
        Distance: -2010; Region: intergenic
      • AT2G01420.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 1688; Region: intergenic
    Flanking Genome Sequence: GT19219 - 5-prime edge 
    CCTACTTTCT CCATGATACA ATACAGCAAA ATCAACTATA TTTTCTCTAA 
    AATAAAATCA ACTCAAAAAT AGAGGAAAAA ATAGAGTTGA GCATTGGAGA 
    TGCTCTTAGT GTTTAGAGCT AGTGCCATCG ACGAATCTGA ACTTTCTGAA 
    CTTTCATATT TTCAAAAATT CATATTTGAG GTTAGAGTGG ATACTAATAG 
    GAATCATAAC TATCAACAAA TTTCCATACT TCCGGGGTTG TATGTCTACT 
    TTGTTGTAGT ATCTAATAAT ATGACTCTTT TATCTGTGAG ATGAAATGCT 
    TTGAATTAAT GGATTGAAAC AAAATCAAAA AGCACAATCG ATAAAGATAT 
    AAATCGAATA AAACAATAAA GATGAATTAA TGGGGGTATT GAGAGAGAAA 
    GGTGATGGGC AATGTATGAG GAACCACGAA CACTGGTCTA GTCGTAGGGT 
    CGTTCTCCTT ACATTTAGAT GCAAAGGTCC AAATTACATA ACATGCATAA 
    GATTC

AT2G01410.1

Model type
Protein coding
Short Description
NHL domain-containing protein
Computational Description
NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT2G16760.1); Has 137 Blast hits to 137 proteins in 39 species: Archae - 0; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01420.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).
Computational Description
PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, pattern specification process, auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1811 Blast hits to 1602 proteins in 498 species: Archae - 31; Bacteria - 1046; Metazoa - 12; Fungi - 10; Plants - 485; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).
Link
InterPro Scan - TAIR