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GT19238

CSHL Arabidopsis genetrap mutant lines

Original: GT19238

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19238

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23101454 [Map]; Strand: w
      • AT5G57090.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT19238 - 5-prime edge
    TGTACGGAGA CTTCTCCGGT AACCTAATGG TGCAGATCGT GGTGCTTCAG 
    AGCATCATAT GGTATACATT AATGCTCTTC TTGTTTGAGT TCCGTGGGGC
    TAAGCTTCTC ATCTCCGAGC AGTTCCCGGA GACGGCTGGT TCAATTACTT
    CCTTCAGAGT TGACTCTGAT GTTATCTCTC TTAATGGCCG TGAACCCCTC
    CAGGTATGAA TTTTTCACTG ATGACCTTTT TCATATGTTT GTTCAAATTA
    ACGGACCGGT TAACTCAAGT AAACTAGAAA ATGGGTAGTT ACTAGTTACG
    ACATGACTAC ATGTCATTTT GGGATTCCTT TTTGCCTATG TAAATCTATA
    ACAAATTTTG AGTTTTGTCT GAGTTCCTTT TTCAGAAGTC AAAAATAATC
    TTCAAAGTGA CGTGTTACAT TATTCACGCA GAATTTAATA ATTAGTACAA
    TATAAGAAAT ATCAAGTTAT TAACTATAGT CTAGTTGAAT TTTCATTCTT
    TTTGTACCGA TTCGGTTA

AT5G57090.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.
Computational Description
ETHYLENE INSENSITIVE ROOT 1 (EIR1); CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT2G01420.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR