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GT19269

CSHL Arabidopsis genetrap mutant lines

Original: GT19269

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19269

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22138728 [Map]; Strand: w
      • AT5G54510.1 - [+] show detail - Auxin-responsive GH3 family protein
        Distance: -5050; Region: intergenic
      • AT5G54520.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 7786; Region: intergenic
    Flanking Genome Sequence: GT19269 - 5-prime edge 
    TTTCTCCCTG CTCAAACCCT AGCTAGTCGC AACTTGTGTA CACACTAATT 
    TTTCTTAAAT CACCATTAAC TATCCGGTTC CTCTAGCATC TCTTGGAAGT 
    GAGAAAGGGG CAAGTTTTCC GGTAAATAAT TGTTTCACAG GTCAATTATT 
    GGACAATTCA TCGAACCATC CAAAACTGAA TAGAAGTTAA ATTCCAAATT 
    TATGATGGTC TCAAGACGTT GGTCAACTCA TCAAAATTTT GTTTATGTGT 
    ATGTGTACAA ACTATTGTAG ATGTGTAGTT AAAAACTACG ATGCTCCAGG 
    TTTATTCGAG AGAATAAGCA CTATCTATAC CTAGAAGATG TAACAATCTC 
    ATAGTATTTC CCATTTTTTT CCAAGATAAT TGACTCTCAT GTCTCGCATT 
    CATTTCCAAG AATAATTAAT TTCATTACAA AATTCATCAT TAATTATGAC 
    AAGTAGTATG GAAAGACCTG GAAAAAATTC TCATTACCAC TCTATACGAA 
    TAAATACAAA TACACCGTAT ATAAATGTGG ATGTTCGATT TACACTATAA 
    ATTTCGGGAT CCAACACAAA CAATAAACTT TTAAAAACCA CGCATAATCT 
    ATAAAATACA TGTAGTGTAA CGTGAAGGCA GCACCGTATC TTATGAAGAG 
    GTTAAACTAT TATGATTAGT TCGAATTAAA AGGGAAGTAA ACAAAATTAC 
    AAAAAAGGAA TTAAAGTGGA GACGACTGAA AATTGATTGG GTGGCGAGGA 
    TTCAAAAAAA AACACA

AT5G54510.1

Model type
Protein coding
Short Description
Auxin-responsive GH3 family protein
Curator Summary
Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3).
Computational Description
DWARF IN LIGHT 1 (DFL1); FUNCTIONS IN: indole-3-acetic acid amido synthetase activity; INVOLVED IN: auxin homeostasis, response to auxin stimulus, auxin mediated signaling pathway, unidimensional cell growth; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT4G27260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G54520.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G10580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR