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GT19312

CSHL Arabidopsis genetrap mutant lines

Original: GT19312

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19312

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9647957 [Map]; Strand: w
      • AT2G22680.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 344; Region: intergenic
      • AT2G22690.1 - [+] show detail - zinc ion binding
        Distance: 1733; Region: intergenic
    Flanking Genome Sequence: GT19312 - 5-prime edge 
    TTGACTGATA ACTGACTAGA GCTCTTCCAT TTGTTTTGTT GGAAAATTTA 
    TACGCATTCG AAATGCTTAC AACATACATT AGTCGCGTTG AACATGGCAT 
    GATCTTTTCT TTTACCT

AT2G22680.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Computational Description
Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G37890.2); Has 1023 Blast hits to 1022 proteins in 225 species: Archae - 2; Bacteria - 267; Metazoa - 133; Fungi - 122; Plants - 361; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22690.1

Model type
Protein coding
Short Description
zinc ion binding
Computational Description
zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH/CRA/RING-U-box domains-containing protein (TAIR:AT4G37880.1); Has 761 Blast hits to 757 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 327; Fungi - 206; Plants - 137; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Link
InterPro Scan - TAIR