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GT19541

CSHL Arabidopsis genetrap mutant lines

Original: GT19541

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19541

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14648081 [Map]; Strand: w
      • AT2G34710.1 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: -3808; Region: intergenic
      • AT2G34720.1 - [+] show detail - nuclear factor Y, subunit A4
        Distance: 1686; Region: intergenic
    Flanking Genome Sequence: GT19541 - 5-prime edge 
    TGGATAAAAA CGAAGGCTCC AAGTTTGATA GGCTGCTCAT GCATATATTA 
    GTTTTTGATC ATATAATAAT ATAATTTAAT AATTATGAGT GGGATTAAAG 
    TTTGTAGATA TCACTCGCCA TGACCTTAAC AATTGAGCTT ATAAAAGACG 
    TTCCACAAAT ATACATTTTT TCACTACGTC ATATGACGAC AACATCGCGT 
    TTGATTCTGA AGAAGAGGAT CGTTTTCAAT CAAAATAATT GATCCTTTAC 
    CCAAAAGATT ATAATATTTC AATCAAATAA TGGACCCGTT ACCAAATTAA 
    CTATAGTTGA TTATGGTGTG AATATGATGA TCAGTATATA TATATGATCT 
    AATGATCCAT CAAAAGAGTT CATCTCCTCT CGA

AT2G34710.1

Model type
Protein coding
Short Description
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Curator Summary
Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA.
Computational Description
PHABULOSA (PHB); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT1G30490.1); Has 3393 Blast hits to 3288 proteins in 275 species: Archae - 0; Bacteria - 20; Metazoa - 905; Fungi - 114; Plants - 2320; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G34720.1

Model type
Protein coding
Short Description
nuclear factor Y, subunit A4
Computational Description
"nuclear factor Y, subunit A4" (NF-YA4); CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A7 (TAIR:AT1G30500.2); Has 682 Blast hits to 682 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 131; Plants - 381; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR