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GT19556

CSHL Arabidopsis genetrap mutant lines

Original: GT19556

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19556

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT19556 - 5-prime edge 
    TTATCGTTTT TTCCCCCAAC GGCAAAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4441281 [Map]; Strand: c
      • AT3G13594.1 - [+] show detail - unknown protein; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 prote...
        Distance: 11; Region: intergenic
      • AT3G13600.1 - [+] show detail - calmodulin-binding family protein
        Distance: -3821; Region: intergenic
    Flanking Genome Sequence: GT19556 - 5-prime edge 
    TTTGAGACAA TACTAAAATA AAGAAATATG AGAGACCAAA AGAACGAAGC 
    CGCTAGGTTC CAAAAGAAGA CGCGGGGTTG GTTCAGTAAA AAGGAGAAAA 
    AGTGCACCGA CGCGACGACA AGTAGGAGTG AAACGAACCA CCTGTGTTGC 
    GGTGCACCGT CTCGTACTCT CTATTATTGT TGCTTATCAT TTTTTCCAAG 
    AGAGTACGGC CACTTTTGCT TTGTTGACCA TTGCTGGATT TTATAGTCTC 
    TTGTTGACTG GCTCGTTCAA AACTCATCTA CAGTAGTCAC TAATTGTTCT 
    TCTCTCTCGA CTAGTGGAAT GGATATAACA AATATTGTGA GTCCAAAAAG 
    TAAAACTTTG TTGTGATGAT GAAAATGTTC CCATTTATTG GACGGTAGAA 
    GAAAAGGACC AAGGAGTAAA CGCGAGAAAG TGATTTATGG TTTTAGTTGT 
    GGACTATGGA TATCATTTAA TACTTCATTA CTCATCCATC TACCTCTTAT 
    TATATATTGA TGACAGATAT TTATGGTTTC GTTATTTTAG TAACTTATGT 
    TTTTACATGT AAAAATGTTT TATGTTTATT ATTTAGACAT TAATGGTTAT 
    GTTTAGAATA TGTAAACATG TTATTACGAA TCTGAAATAA TGTAAGAAGA 
    GATGTGTTAT TATATTAATT GCCGGTTGAT TATGAT

AT3G13594.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G13600.1

Model type
Protein coding
Short Description
calmodulin-binding family protein
Computational Description
calmodulin-binding family protein; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT3G58480.1); Has 2440 Blast hits to 1727 proteins in 273 species: Archae - 4; Bacteria - 163; Metazoa - 734; Fungi - 252; Plants - 308; Viruses - 55; Other Eukaryotes - 924 (source: NCBI BLink).
Link
InterPro Scan - TAIR