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GT19596

CSHL Arabidopsis genetrap mutant lines

Original: GT19596

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19596

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21766552 [Map]; Strand: c
      • AT3G58865.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT19596 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGATGTGT 
    TGGTATGGAA CCTACACCGT CGATCCTGTG TGTCAGAGGG GCTAGTTTTC 
    CGGGAGAGTT GTAATTGGTT TGGTGTGTCT GTGGAGAGCG TCTATGGACG 
    GAAACCGGAA CCCTCCGACT ACAGTTCGTG TTCCTTCTAG GCGTTCCAGT 
    TCTTATCTAG CCCTCCAATG TTGGATCTTT TCAATTAGAA TTAATTCTTA 
    CAGGTATGTA TAAAGAAAAC GTAACTGTTT GGATCGGTTT TGAAAAACCT 
    AATTAACCAA ACCAAAATCA AAACCATTCA TACGCCAAAT CCTTAGAATC 
    GACAGTCGAG CATACTTAAC ATCTTACGCT ATAACATGTA TAATACATTT 
    ACGATTCTTT GATTTCCAAA GCAAGTTGAT GTATTATTGG CATGCTTCTC 
    ACCGAGCACA AATTAGACAG CATCTTATCG GGTTCATCAC TCTACGTGTT 
    TGATACTCCC ACCAAAAACA AAGGTGCGTC TTTATTAGGA AAAACTTCAA 
    AGGAAGAAGT TGACTCTTTT AGCTTCATAG CTAGTTAATT TGGAAAATAA 
    AACTTCCACC AAGACTTCAT TGGGTAGTCC ACGACCTATG TCAAACAACA 
    GTGCACCTTG AAATTAACAT TGCGACCCGA TCAGTCGTTG AATGGGTTAG 
    AATCCGGCGT TACAGGGGAC TGTGGACGAC CATCTTTAAC ATAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 272155 [Map]; Strand: c
      • AT4G00651.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -276; Region: promoter
    Flanking Genome Sequence: GT19596 - 5-prime edge 
    TTCCATCCTA CTTTCTCGCC GACTAGAAAC AGAAGCCTCC GGCGAACTTC 
    TCCCTCCTCA AAAAATCTCT CTCTCTCTCT GATATGCTAT CTCTTATTCT 
    CTTTCGATTG TCCCACTTGG TATCTTATTA GTGGTCTTGT GCCAATGTGT 
    GATTTGAATA GAGCCATTTT AACGAACTCC TGAACTTATG ATTCTCTTGT 
    CTTTAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 272126 [Map]; Strand: c
      • AT4G00651.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -247; Region: promoter
    Flanking Genome Sequence: GT19596 - 5-prime edge 
    CAGAAGCCTC CGGCGAACTT CTCCCTCCTC AAAAAATCTC TCTCTCTCTC 
    TGATATGCTA TCTCTTATTC TCTTTCGATT GTCCCACTTG GTATCTTATT 
    AGTGGTCTTG TGCCAATGTG TGATTTGAAT AGAGCCATTT TAACGAACTC 
    CTGAACTTAT GATTCTCTTG TCTTTAGTGT TCTTCTCTCT CGA

AT3G58865.1

Model type
Transposable element gene
Short Description
transposable element gene
Curator Summary
Member of Sadhu non-coding retrotransposon family
Link
InterPro Scan - TAIR

AT4G00651.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 34 Blast hits to 34 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR