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GT19598

CSHL Arabidopsis genetrap mutant lines

Original: GT19598

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19598

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 176359 [Map]; Strand: c
      • AT1G01480.1 - [+] show detail - 1-amino-cyclopropane-1-carboxylate synthase 2
        Distance: 0; Region: intron2 (CDS)
      • AT1G01480.2 - [+] show detail - 1-amino-cyclopropane-1-carboxylate synthase 2
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT19598 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTATATA AATCATTCAT 
    CTCATTCAGA TATCTTGTAA TCAGCTACGG ACATATTAGA AAAACAATTT 
    TTACATGGAA AGTTAATAAC ACCTCTAAAC AATCAGTTGA TATGATCTGC 
    ATAAGAAAAA CAAATTCAGT CGTGGTTTTT TTGTTTTTTT GTTTTTTTGT 
    TTTTTTGTTA AAGAGTCAAG GAGCCTTGTA GTAGTAACTT ATTTACTAAT 
    CTTATCCCTT ATTTCCTTTT TTAAATTTTG GGCTTTTGCG CATTTGCTCG 
    TTACATCTAA AAGTCTAAAA GTGACT

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT19598 - 5-prime edge 
    GGGGGGGGGG GGGGGGGGGG GG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 176291 [Map]; Strand: c
      • AT1G01480.1 - [+] show detail - 1-amino-cyclopropane-1-carboxylate synthase 2
        Distance: 0; Region: exon2 (CDS)
      • AT1G01480.2 - [+] show detail - 1-amino-cyclopropane-1-carboxylate synthase 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT19598 - 5-prime edge 
    ACTTTCTCCC TGGATTTATA GTACCTGTCT AAACTTCTTA AGACCATGGT 
    AGTCTTGGAA ATTAGCGATG TCGCTAAACT GATGAATACC TTCAAGGGTG 
    CAAATAGAAG CTTCTGGGTT CTCTTTGACC CAATCTTTGA TCAAATCTAA 
    GCAAAGCTGT AAGAAGTTTA GAAAAATGTG TTATTAAGTA TTTAACTTGA 
    CTTGAAAAGA AGAAAAAAAG GTATTAGCTT GATGTGTATA CGTGTTCATA 
    TATAATAGCT AATAGATGGA AGTTCATGCA CAACGACAAC AACATATAAC 
    ATGATTTATT GGATTATATA TAATCTGTAC CTGATTCTCT GCAAGACCCA 
    TTTGGATGAT CCCATGGGGG TTACGGGAAA GATGAAAAGG ATCTTTGTCG 
    TAAGCTTTCC ATCCATCAAA GTACTCTGAG TTCTCTCCGT GTTGATTGTT 
    AGTCGCTATC TTCGACAAAA CTGCACCTTT ATTTTTTCCC GGAAGACCCA 
    TTTGCTGTGT CAATTCTCAC TTCTTTGTAG CTGTTTTTTT TTTTTTGGGG 
    GGTCCCATTT TTTTTTTTAA AAAAGTTTTT GGGGGGGGGA AAAAAAAAAC 
    GAAGAAATTT TTTTTTTTTT TTGGGGGGGG AAAAAAAACC CCTGGGGGGA 
    CCCAAAAAAG TGGGGGGGGG GCCCCAAAAA AAAGGGGTTT GGTTTTTTGA 
    AAACCAGGGA AAAAAAACCC GGCCCCCCGG GGAAAAACCC CCCCCCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 176274 [Map]; Strand: c
      • AT1G01480.1 - [+] show detail - 1-amino-cyclopropane-1-carboxylate synthase 2
        Distance: 0; Region: exon2 (CDS)
      • AT1G01480.2 - [+] show detail - 1-amino-cyclopropane-1-carboxylate synthase 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT19598 - 5-prime edge 
    ATAGTACCTG TCTAAACTTC TTAAGACCAT GGTAGTCTTG GAAATTAGCG 
    ATGTCGCTAA ACTGATGAAT ACCTTCAAGG GTGCAAATAG AAGCTTCTGG 
    GTTCTCTTTG ACCCAATCTT TGATCAAATC TAAGCAAAGC TGTAAGAAGT 
    TTAGAAAAAT GTGTTATTAA GTATTTAACT TGACTTGAAA AGAAGAAAAA 
    AAGGTATTAG CTTGATGTGT ATACGTGTTC ATATATAATA GCTAATAGAT 
    GGAAGTTCAT GCCCCACGAC AACAACATAT AACATGATTT ATTGGATTAT 
    ATATAATCTG TACCTGATTC TCTGCAAGAC CCATTTGGAT GATCCCATGG 
    GGGTTACGGG AAAGATGAAA AGGATCTTTG TCGTAAGCTT TCCATCCATC 
    AAAGTACTCT GAGTTCTCTC CGTGTTGATT GTTAGTCGCT ATCTTCGACA 
    AAACTGCACC TTTATTTTTT CCCGGAAGAC CCATTTGCTG TGTCAATTCT 
    CACTTCTTTG TAGCTGTTTT TTTTTTTTTG GGGGTTCAAA ATTTTATTTT 
    TAAAAAATTT TTTTGGGGGG GATAAAATTA AAAAAAAGAT TTTTTTTTTT 
    TAAAAAAAAT TTAAAAAAAA

AT1G01480.1

Model type
Protein coding
Short Description
1-amino-cyclopropane-1-carboxylate synthase 2
Curator Summary
a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library.
Computational Description
1-amino-cyclopropane-1-carboxylate synthase 2 (ACS2); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ACC synthase 1 (TAIR:AT3G61510.1); Has 30194 Blast hits to 30192 proteins in 2936 species: Archae - 881; Bacteria - 20730; Metazoa - 650; Fungi - 807; Plants - 1338; Viruses - 0; Other Eukaryotes - 5788 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01480.2

Model type
Protein coding
Short Description
1-amino-cyclopropane-1-carboxylate synthase 2
Curator Summary
a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library.
Computational Description
1-amino-cyclopropane-1-carboxylate synthase 2 (ACS2); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACC synthase 1 (TAIR:AT3G61510.1); Has 28365 Blast hits to 28364 proteins in 2923 species: Archae - 821; Bacteria - 19365; Metazoa - 634; Fungi - 793; Plants - 1286; Viruses - 0; Other Eukaryotes - 5466 (source: NCBI BLink).
Link
InterPro Scan - TAIR