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GT19605

CSHL Arabidopsis genetrap mutant lines

Original: GT19605

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19605

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6928508 [Map]; Strand: w
      • AT3G19910.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT19605 - 3-prime edge 
    GAAACGGTAG AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAA 
    TCAGCAGACA ATCCTCTACT TTCGGTTCCC ACAATGTCGC CAAGTGCAAG 
    CAACTCCTGC AAACGTTAGA GTCTAGTTAT AAGCCAGTAA ATGTGTTATC 
    TGAATTTTGC ATATTGAAAA TTGAAATGCA TGACGGATCT TAACACTAGA 
    TTCTAACAAG TTTAACAATC TAATTCGCAT TAAACTACAA ATCATTCACA 
    AAATCATGAG AGAGACCGAG AATCCAAAAA GCATAGAATA CCACAAATGT 
    TTTTATACCT CATATGAAAG CTCATCAGGA TCCATCTCAT CCCAGGCATC 
    CTGCAAAAAT TAATCGTACA GAACGTAAGT GGAAGAAGAT TCAAATCACA 
    TCAATGAAGC TTAAGTTTCT ATGATTCTCT ACCCTGCAAT TCTAAATTTC 
    AGTATATTTT TTTCCACAAA GTTCAGTGTG TACAGCGAGG GCCCATACTT 
    CAAGGTGTGA GCATAACCAT CTCCAATACC AGTGACCAGT TAATGCTAAA 
    TTGATTCAAT TACCCTCTGG TAAATGCATT TTGACCTTCA AACATACAGA 
    CATACAGTTG TGAAAAATTC CAGTAGCATA AACCGAGAAT AATTAGGTAC 
    GCCTAGTACC AAATACCAAA CAATTTCGAC TGAGTAAGAC TACATAATAA 
    TTATTCATGG GCCATGGCAC ACTATTCCAG TGACCTGGCT TAACTACAAA 
    CAATAACTAC CCCATACACA GGGAGGATAA TCTAACTGGG TCTCCGGTCT 
    AAAATGGTTA ACACCATGGA CTAAACTATC ACGAAAACGA AACAACTAAT 
    G

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6928925 [Map]; Strand: c
      • AT3G19910.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: GT19605 - 5-prime edge 
    TAAAGTTCCC TCTCTTAAAC AGATAATATT TATGGAAATA TCAGGAGCTG 
    TGGCGGTTTT TCTGACGTGA ATACATCTAT CCTTAACAAA AACGGTATCT 
    GTCAAGTGAC AAAAACAGAC TACAAACAGA CTCCCTGCTT GGGTTTATCA 
    GGTTCCACAT AGCTGACTAC AATAACTATA TACTTGTAGG TTCTCTACAC 
    GTTCATTTAA ACATAAAAGA CATACCTTGT TTATCTTCAA CCAGGTGCTT 
    ATGCACTCCG AGTGGTAAGA ATGTTTGCAT GGGAGCAGTA TCAGGTCTTC 
    GTCATCCTCA TAGTCTAAAC CACATATAAC A

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6928564 [Map]; Strand: w
      • AT3G19910.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT19605 - 5-prime edge 
    CTTTCTCCCT GCTGCTGATA CAATTGCATC TTTGCCTTCA AAAGATATAA 
    AGAAGGAGAC AATCAGAACG GAACCAATGA GTCGTAAGGC CTTTTTTGTT 
    ATCAATTAAG TAAACCATTG ACAATTTTGT GCATGTACCT AGATAATTAA 
    GTTTTTCTAT GCTTGATGCA GATGTGTTAT ATGTCGTTTA GACTATGAGG 
    ATGACGAAGA CCTGATACTG CTCCCATGCA AACATTCTAC TCACTCGACG 
    AGCATAAACA ACTGGTTGAA GATAAACAAG GTATGTCTTT TATGAAAAAT 
    AAACCTGTAG AGAAGCTAAA GTATATAGTT ATTGTAGTCA GCTATGTGGA 
    ACCTGATAAA CCCAAGCAGG GAGTCTGTTT GTAGTCTGTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6928576 [Map]; Strand: w
      • AT3G19910.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT19605 - 5-prime edge 
    TGCTGATACA ATTGCATCTT TGCCTTCAAA AGATATAAAG AAGGAGACAA 
    TCAGAACGGA ACCAATGAGT CGTAAGGCCT TTTTTGTTAT CAATTAAGTA 
    AACCATTGAC AATTTTGTGC ATGTACCTAG ATAATTAAGT TTTTCTATGC 
    TTGATGCAGA TGTGTTATAT GTCGTTTAGA CTATGAGGAT GACGAAGACC 
    TGATACTGCT CCCATGCAAA CATTCTTCTC TCTCGACCAG CATAAACAAC 
    TGGTTGAAGA TAAACAAGGT ATGTCTTTTA TGAAAAATAA ACCTGTAGAG 
    AAGCTAAAGT ATATAGTTAT TGTAGTCAGC TATGTGGAAC TTGATAAACC 
    CAAGCAGGGA GTCTGTTTGT AGTCTGTTCT TCTCCC

AT3G19910.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G63530.2); Has 15086 Blast hits to 12507 proteins in 429 species: Archae - 8; Bacteria - 555; Metazoa - 4333; Fungi - 1497; Plants - 5032; Viruses - 175; Other Eukaryotes - 3486 (source: NCBI BLink).
Link
InterPro Scan - TAIR