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GT19607

CSHL Arabidopsis genetrap mutant lines

Original: GT19607

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19607

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20416968 [Map]; Strand: c
      • AT3G55090.1 - [+] show detail - ABC-2 type transporter family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19607 - 3-prime edge 
    AATGAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TACGTGAGAG AGAACGTAGG AGGATCTCCG GTAAGCGTTG TAAGCTGTTT 
    CTCTCATGAA GATGTAACGT TCCTGGAGGA ACACGGGAAG AGCATCGGCG 
    CAAGTGTAGA ACATTGTTGA CATTGCGAAT GCGAAGAACC CTAACCGCTC 
    TTGAACTCCT TTTGGTGAAT TATCCAATCG CCAGAATACG GTGGCTAAGA 
    TGAATCCGGT GACGATTACG GTGGCTAATC GCATTCCGAG TAGCTCCGGT 
    TGTCGTCGGG AGTTGAGGAT TGAGCGTCTG GTGAGAGTTT TGATTTCGAT 
    CCAGAACGGA TTCGCGAATG CAGGGACGGC TAAGGTTCCG CCACCGTGGT 
    TTATGGCGGA GGAACCACCG CCGCCGCCGG AGACTAGTTT TCCTCTGCTT 
    ATGCTGGCGG AAATCGCTTC TTTCAAGGTT AAATTTGGGT TTGGAGAAGC 
    CGGCGGAGTT AGGGTTTGAG GATTGCTC

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT19607 - 5-prime edge 
    GGGGGGGGGG GGGGGGGGGG GGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20416888 [Map]; Strand: c
      • AT3G55080.1 - [+] show detail - SET domain-containing protein
        Distance: -991; Region: promoter
      • AT3G55080.2 - [+] show detail - SET domain-containing protein
        Distance: -954; Region: promoter
      • AT3G55090.1 - [+] show detail - ABC-2 type transporter family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19607 - 5-prime edge 
    ACCTTCCCTT CGCTCATCTT CCTCTCTGTA GCTTTCGCAG TGACGACGTT 
    TTGGGCTGTT GGGCTTGAAG GAGGTCCAAT GGGCTTTTTA TTCTACTGCT 
    TAATCATCTT AGCCTCTTTC TGGTCCGGAA GCTCCTTCGT GACTTTCTTA 
    TCCGGCGTCG ATCCACATGT GATGTTAGGC TACACGATCG TTGTTGCTAT 
    TTTAGCTTAC TTCTTGCTTT TCAGTGGCTT CTTCATCAAC AGAGATCGAA 
    TCCCTCAGTA TTGGATTTGG TTTCATTATC TTTCTCTGGT TAAGTATCCA 
    TACGAGGCGG TTCTTCAGAA CGAGTTCTCG GATCCTACAG AATGTTTTGT 
    GAGAGGTGTT CAGCTTTTCG ACAACTCGCC TTTGGGAGAA TTGACGTATG 
    GGATGAAGCT GAGGCTATTG GATTCTGTGA GCCGGTCGAT AGGTATGAGG 
    ATATCGAGCT CTACGTGTTT AA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20416906 [Map]; Strand: c
      • AT3G55080.2 - [+] show detail - SET domain-containing protein
        Distance: -972; Region: promoter
      • AT3G55090.1 - [+] show detail - ABC-2 type transporter family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19607 - 5-prime edge 
    CTGCTCTCCG CCATTGTTAC CTTCCCTTCG CTCATCTTCC TCTCTGTAGA 
    TTTCGCAGTG ACGACGTTTT GGGCTGTTGG GCTTGAAGGA GGTCCAATGG 
    GCTTTTTATT CTACTGCTTA ATCATCTTAG CCTCTTTCTG GTCCGGAAGC 
    TCCTTCGTGA CTTTCTTATC CGGCGTCGTT CCACATGTGA TGTTAGGCTA 
    CACGATCGTT GTTGCTATTT TAGCTTACTT CTTGCTTTTC AGTGGCTTCT 
    TCATCAACAG AGATCGAATC CCTCAGTATT GGATTTGGTT TCATTATCTT 
    TCTCTGGTTA AGTATCCATA CGAGGCGGTT CTTCAGAACG AGTTCTCGGA 
    TCCTACAGAA TGTTTTGTGA GAGGTGTTCA GCTTTTCGAC AACTCGCCTT 
    TGGGAGAATT GACGTATGGG ATGAAGCTGA GGCTATTGGA TTCTGTGAGC 
    CGGTCGATAG GTATGAGGAT ATCGAGCTCT ACGTGTTTAA CGACGGGTGC 
    TGATGTTCTG AAGCAGCAAG GAGTGACACA GCTTAGTAAA TGGAACTGCT 
    TGCTTATCAC GGTAGGTTTC GGATTCCTAT TTAGGATTTT GTTTTACTTG 
    TGTTTGTTGC TAGGGAGCAA GAACAAGAGG AGGTGAAAGT GAAACTACTG 
    ATGATACCTA AAAACAAAAA CATATATTGT AATTC

AT3G55080.1

Model type
Protein coding
Short Description
SET domain-containing protein
Computational Description
SET domain-containing protein; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 1136 Blast hits to 1133 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 243; Fungi - 329; Plants - 401; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55080.2

Model type
Protein coding
Short Description
SET domain-containing protein
Computational Description
SET domain-containing protein; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55090.1

Model type
Protein coding
Short Description
ABC-2 type transporter family protein
Computational Description
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to cyclopentenone; LOCATED IN: membrane; EXPRESSED IN: sepal, root, flower, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT2G39350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR