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GT19617

CSHL Arabidopsis genetrap mutant lines

Original: GT19617

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19617

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT19617 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACATAG 
    GTGACTTTTA TAGTTTCTCT AGCATCAACT GACACAGAAA AGGTTCTGTT 
    GATACGGCGT TAGGATTAAA CAGGTTTTGA ATACTCTTTT GTCTCTAATC 
    TCTATGGTTT GTTTCCTTAC TAAGTACCAT CGGCTGCTTT TGTTTCGGAT 
    TGCGGGAACT GGATAACTGT GGACACTTCA AAAGTATTAA GTAGAGGTGG 
    AAGAGTTGAT CTGTTAGCTC TTATCAACTG AAAACTGCAT TGCGTCCCTT 
    TGCAAGTCAT CGGCGACAAA CTAGGGATAG TATTTCTTTG TAAGTTTTGA 
    GAAATTATAG GATCAGACAT AACTTCCCCA TTCCACACCA CGTTGAATTC 
    TCTGGTATCG TTAGTACGCA ATTCTTGGAT CTCAGCGAAA ATACATGTAT 
    GGATAATATG TGATCAACAT TACGCCAACT CTTTTCAAGC TTCAATGCTG 
    CATTGGTATT AGCAGGTATG GCAGCAGTTG TAATCACAGT CTTTGGTAGA 
    TCATAGTTAT ATTGCTAGTG GTGGAAATCT GAGTCCAATC AGTATCAAAA 
    AACGAAATCC ATCGGTGACC ATAGATATAT CATCGGGTAC CTGGAGATGT 
    GAAGAAATTA TCTTAACTGT GGATTAAGTA GATAGAAATG GACGATATCA 
    GTTGTTTGTT TCATTGTTTT ATCAATTCTT ATACTTGTTT AGGCCGTAGG 
    TTTTTTAACA GAGCGAAACA GAGCACAAAT GAAGAGATAA TGAAGGATAT 
    ACCCGAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24041626 [Map]; Strand: c
      • AT5G59670.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT19617 - 5-prime edge 
    CATGGAAAAC ATTAACCATT AGAACCACTG CACTTCTGAG AAACTTAGTG 
    ATGTATATAG AACAAAGAAG ATATCCCATA CCTTGTTGGT CTTGAGCTTG 
    AACAATATGA ATGATGGTCA AAGTTAACAG TACCAACAAA AGCCCAAAAG 
    AACTCTCCAT ATTCTCTCAA CTCCAAATAA ATAAGCAAAC CAAAATCATA 
    CACTAAAAGA AAAACTTTTG ATTGGTGAAA AAATTGAGTA AAGGTGGTTT 
    CTATTGCAAC TTCACCAAGG GAAGAAGATG AAGGTTAGTT AAGAGGAAAA 
    AATTGTCCCA ACATCATCAT TTTGAAGTAG CCAGACCAAG AAGCACGTGA 
    ACCAATAATG AATTGGTATC AATGATATAA GACGAGTCCC ACAAGACTGT 
    CT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24041235 [Map]; Strand: w
      • AT5G59662.1 - [+] show detail - other RNA
        Distance: -824; Region: promoter
      • AT5G59670.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -259; Region: promoter
    Flanking Genome Sequence: GT19617 - 5-prime edge 
    CCTACTTTCT CCCTGCACCT ATGGATTGAG TAAAACAAAT CTAAACATGG 
    TTGTGATTTC TTATTAAACG AAATAATTAG GCTAATCAAC TCGAGATGAA 
    TTTAATTAGG TGAGAGGAAT CAAACAAACG AAAAGACAGT CTTGTGGGAC 
    TCGTCTTATA TCATTGATAC CAATTCATTA TTGGTTCACG TGCTTCTTGG 
    TCTGGCTACT TCAAAATGAT GATGTTGGGA CAATTTTTTC CTCTTAACTA 
    ACCTTCATCT TCTCCCCTTG GTGAAGTTGC AATAGAAACC ACCTTTACTC 
    AATTTTTTCA CCAATCAAAA GTTTTTCTTT TAGTGTATGA TTTTGGTTTG 
    CTTATTTATT TGGAGTTGAG AGAATATGGA GAGTTCTTTT GGGCTTTTGT 
    TGGTACTGTT AACTTTGACC ATCATTCATA TTGTTCAAGC TCAAGACCAA 
    CAAGGTATGG GATATCTTCT TTGTTCTATA TACATCACTT TGTTTCTCAG 
    AAGTGCAGTG GTTCTAATGG TTAATGTTTA CCATGTCTGT TAACAGGGTT 
    CATCAGTTTG GATTGCGGGC TACCCCCAAA TGAGACGTCT CCTTATAAAG 
    AGAATCGTAC TGGTCTGTTG TTCTCTTCGG ACGCAACATT CATCCAGAGC 
    GGAAAAACTG GTAGAGTCCA AGCAAATCAA GAGAGAAAAT TCTTGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24041257 [Map]; Strand: w
      • AT5G59662.1 - [+] show detail - other RNA
        Distance: -846; Region: promoter
      • AT5G59670.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -237; Region: promoter
    Flanking Genome Sequence: GT19617 - 5-prime edge 
    ATTGAGTAAA ACAAATCTAA ACATGGGTTG TGATTTCTTA TTAAACGAAA 
    TAATTAGGCT AATCAACTCG AGATGAATTT AATTAGGTGA GAGGAATCAA 
    ACAAACGAAA AGACAGTCTT GTGGGACTCG TCTTATATCA TTGATACCAA 
    TTCATTATTG GTTCACGTGC TTCTTGGTCT GGCTACTTCA AAATGATGAT 
    GTTGGGACAA TTTTTTCCTC TTAACTAACC TTCATCTTCT TCCCTTGGTG 
    AAGTTGCAAT AGAAACCACC TTTACTCAAT TTTTTCACCA ATCAAAAGTT 
    TTTCTTTTAG TGTATGATTT TGGTTTGCTT ATTTATTTGG AGTTGAGAGA 
    ATATGGAGAG TTCTTTTGGG CTTTTGTTGG TACTGTTAAC TTTGACCATC 
    ATTCATATTG TTCAAGCTCA AGACCAACAA GGTATGGGAT ATCTTCTTTG 
    TTCTATATAC ATCACTTTGT TTCTCAGAAG TGCAGTGGTT CTAATGGTTA 
    ATGTTTACCA TGTCTGTTAA CAGGGTTCAT CAGTTTGGAT TGCGGGCTAC 
    CCCCAAATGA GACGTCTCCT TATAAAGAGA ATCGTACTGG TCTGTTCT

AT5G59662.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G59660
Link
InterPro Scan - TAIR

AT5G59670.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G59680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR