1. Home
  2. Mutant Lines
  3. GT19620

GT19620

CSHL Arabidopsis genetrap mutant lines

Original: GT19620

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19620

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20936709 [Map]; Strand: w
      • AT5G51545.1 - [+] show detail - low psii accumulation2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19620 - 5-prime edge 
    AAATTGAGTG CGGCTACATC GGGAAACAAG AAAGGGAAAG GTAAGAGAGA 
    GGTGAATCGG CGTGCTCCTG TGGATAAACC TGTGTTCATG AGCGAAGAAG 
    GAGCGGCCAA GGCAGAGGAT CAGAGACAAA ACGATTACGC GTTTCTTCTT 
    ACTTGGCTTG GGCTTGGTGT CGTCATCCTC ATCGAAGGCA TTATTCTCGC 
    TGCTTCAGGT ATTGAATCTG GGCATTTGCG TATTACTTGG TTTGGTTTGT 
    TGGCAGTCGT TAGTGATATG GATCAAATTG CTTAAATCTG TGATTTAGCT 
    ATAGAGATAA TGAATGATCA GAAGAGGATA CTTCTCATTG CCTCTTCTTA 
    GTAGTCTTTG AATATACAGT TATTGAAATC TCCAATTCAC TTCAATAGAT 
    GTGTTGAGAG GATAAACAGT TATTGACATC TCCTTTGTGT GTTTGTGTTG 
    GCTTCTGCAG GATTCCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18779339 [Map]; Strand: c
      • AT2G45560.1 - [+] show detail - cytochrome P450, family 76, subfamily C, polypeptide 1
        Distance: -829; Region: promoter
      • AT2G45560.2 - [+] show detail - cytochrome P450, family 76, subfamily C, polypeptide 1
        Distance: -965; Region: promoter
    Flanking Genome Sequence: GT19620 - 5-prime edge 
    GTTGGATTGA TGACATCATC AAAGCCCTTT TGCACAACAA AGCCCAACAA 
    AAGGAACAGA GTTTTCATCC CATACGACCA GTTAATCCTA TCCCATTTTA 
    TTTTATTTTC ATTCAAAAAA ATTTAGCAGA TTTTCAAATA TTATACTTAA 
    AATCAAATTT GGGTTTTGAA GTTTTTTTTT TTAAAATTAG GGATTTTAAA 
    AAAAATATGA ATTTACCGGG ATTTTGTACC CCCTTTAGCC GTAAAAAATT 
    TCAAATTTTC ATTTTGTTTT TATATCGTTA GGAAAATTTT AGAATTCAGG 
    TTTTTATTTC AAAATTTTAA AAAAGGTTTT TTATTTTTGA AATTTCCTGG 
    GCTTTTATAA AAAAAAATTC TTTTTATTAT TTTAAAAAAT CAATTTATTG 
    GCAACCCGGG GTTTGGAAAA ATTTGGGTTT TGTAATTTAA AAAAAAGCCC 
    AACCCAAATA AAAAACCCTT TTAAAATAAT TTTTTTTTTT TAAGGAAAAA 
    ATTCCAAAAA GGCCCCTGGA AGGGGCAAAC CCGGGCGGGG AATTTTACCC 
    AAACTCCAAA AAAAAAACGG TAAAAAGGAA AAAAAAGAAG AAACCGACCC 
    CTTAACCCCT GGGTAAACTG CCCAAAAAAA AAAA

AT2G45560.1

Model type
Protein coding
Short Description
cytochrome P450, family 76, subfamily C, polypeptide 1
Curator Summary
cytochrome P450 monooxygenase
Computational Description
"cytochrome P450, family 76, subfamily C, polypeptide 1" (CYP76C1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 76, subfamily C, polypeptide 4 (TAIR:AT2G45550.1); Has 35149 Blast hits to 34841 proteins in 1748 species: Archae - 60; Bacteria - 4538; Metazoa - 12163; Fungi - 7375; Plants - 9565; Viruses - 6; Other Eukaryotes - 1442 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G45560.2

Model type
Protein coding
Short Description
cytochrome P450, family 76, subfamily C, polypeptide 1
Curator Summary
cytochrome P450 monooxygenase
Computational Description
"cytochrome P450, family 76, subfamily C, polypeptide 1" (CYP76C1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 76, subfamily C, polypeptide 4 (TAIR:AT2G45550.1); Has 9073 Blast hits to 9044 proteins in 509 species: Archae - 15; Bacteria - 32; Metazoa - 3543; Fungi - 403; Plants - 4946; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G51545.1

Model type
Protein coding
Short Description
low psii accumulation2
Curator Summary
Encodes LPA2 (low psii accumulation2), an intrinsic thylakoid membrane protein required for efficient assembly of Photosystem II.
Computational Description
low psii accumulation2 (LPA2); INVOLVED IN: photosystem II assembly; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR