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GT19632

CSHL Arabidopsis genetrap mutant lines

Original: GT19632

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19632

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10906503 [Map]; Strand: w
      • AT4G20180.1 - [+] show detail - transposable element gene
        Distance: 2099; Region: intergenic
      • AT4G20190.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 5; Region: intergenic
    Flanking Genome Sequence: GT19632 - 5-prime edge 
    GAGAAGAAGT GTTAACTTCA TTCGGTAAAA TTCAATAAAA GAAAAAAAGA 
    ATAGTGAAAC TGTCCAATTT ATTATTCACA CCGCTTGAGC TTCCAAGAAA 
    CTACTGAAAT CCTCGGTGGC TTGTAGCAAC CGTGGCGTGA TTGAATGTGT 
    CGGAGACGTT GGATAAGAAA CCGGCGACGA GGTTGAGAAC CGAACGTGAC 
    GTGGTGACTC CATTGATCTT CTTCATTTCT AACCACAAGT TTTCAAAACA 
    CCTTTGATTT CTTTGTCCAA ATTAGGTTCC TTGTCGAACA CGAAAGCAGC 
    TGAAACAGGA TCGTCTTGAT CGTTCCCTCC CGGCCCACCT TTGATCAATT 
    CGGAAGGCAA GTCGAAGAAA TGGCCTCCAA GATCGGCATT GTCATCGTAA 
    ATCATAGCCG AAGATGTCCA AGAACCGCAC TCGAACCGCT CTAGGGAGGC 
    TCGAGCCGAG AGCACCGCGG TGTCTCTAAT GGAAGCAGTT CTTGCCATCG 
    ATTGAGAGGA AGTCATCGTG GTTGTTCTGG TGAACGATGA ATCGCCTTTT 
    CGAGATGATC TTACAGGCTT TCCTTTGCTG AAACCAAGTA GGTATA

AT4G20180.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 7.2e-10 P-value blast match to GB:AAC24836 pol polyprotein (Ty1_Copia-element) (Candida albicans)
Link
InterPro Scan - TAIR

AT4G20190.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44660.1); Has 271 Blast hits to 209 proteins in 52 species: Archae - 0; Bacteria - 15; Metazoa - 63; Fungi - 14; Plants - 48; Viruses - 3; Other Eukaryotes - 128 (source: NCBI BLink).
Link
InterPro Scan - TAIR