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GT19633

CSHL Arabidopsis genetrap mutant lines

Original: GT19633

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19633

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1256545 [Map]; Strand: c
      • AT3G04620.1 - [+] show detail - Alba DNA/RNA-binding protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT19633 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACCGGT 
    AATGAATTTA GGTTTCCGAT CATTACCTTG GCGAGATTAA CGTAGAAGAA 
    CAATGGCTTC TTGGTGTTGG AAACTTGGAT CCTGTTCTTC TTGTGAGTCT 
    CAACAGTGGC GGTTGTTGTT GTTGTTGCAG GCGCGAGAAC GATGTTCCTC 
    TCCGATGGGA TTGGTGCCGG AGCCGGTGTT GCTACTTCCA TCGCCATCTT 
    TCTCCGATCG ATCACTCTTC TTTCAGTCTC TCTGCGTAAC TTTTCTTCTT 
    CTTCTTCTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1256485 [Map]; Strand: c
      • AT3G04620.1 - [+] show detail - Alba DNA/RNA-binding protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT19633 - 5-prime edge 
    CTTTCTCCCT GATTACCGGA TCGACGGTTT TTCAGACAAA CGAGTCTTCC 
    TTTTTCTCAA TTTTGACTGA TTCTGTTTAC TAGAGTTCGA GATCCGCTTG 
    ATTTTAAGAT TGTAGATTCA GTTAACGAAA CATCGTTTTA GTATCTTGAG 
    ACGAACAATC AGTATTCGCC TGGATTTTGT TTCCGATCTG TTTTTGGATA 
    CTTATAGTAT TGATTCAGGA TCGATCTTTA TCTATTTGAT ACTTTGTGTC 
    CACCAAGTGT TTGATTGTAT TACTTAGAGA GTAATTGGAT CTTTTCGTTG 
    TTTGATGCAG AGGTACATTC AGCAACACAA CGAGGTCGAG CTTTCTGCAC 
    TTGGAATGGG TATATAGACT CTTTCTTTTA CCTTTATCTT TTTTATTTGA 
    TCGGTTTCTC ATCTTTTGCG TGTATATGTA TATAATCTGT AATGTGTGTA 
    TAGCAATCAC AACTGTGGTA ACAATCTCTG AGATCTTGAA GAACAATGGA 
    CTTGCAACAG AGAAGAGTGA GTCAGATCTC TCCCTTCTTA CCATCAATCT 
    TTGAACCTTT CGTTCTATTG AAGAAACT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1256472 [Map]; Strand: c
      • AT3G04620.1 - [+] show detail - Alba DNA/RNA-binding protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT19633 - 5-prime edge 
    TACCGGATCG ACGGTTTTTC AGATCAAACG AGTCTTCCTT TTTCTCAATT 
    TTGACTGATT CTGTTTACTA GAGTTCGAGA TCCGCTTGAT TTTAAGATTG 
    TAGATTCAGT TAACGAAACA TCGTTTTAGT ATCTTGAGAC GAACAATCAG 
    TATTCGCCTG GATTTTGTTT CCGATCTGTT TTTGGATACT TATAGTATTG 
    ATTCAGGATC GATCTTTATC TATTTGATAC TTTGTGTCCA CCAAGTGTTT 
    GATTGTATTA CTTAGAGAGT AATTGGATCT TTTCGTTGTT TGATGCAGAG 
    GTACATTCAG CAACACAACG AGGTCGAGCT TTCTGCACTT GGAATGGGTA 
    TATAGACTCT TTCTTTTACC TTTATCTTTT TTATTTGATC GGTTTCTCAT 
    CTTTTGCGTG TATATGTATA TAATCTGTAA TGTGTGTATA GCAATCACAA 
    CTGTGGTAAC AATCTCTGAG ATCTTGAAGA ACAATGGACT TGCAACAGAG 
    AAGAGTGAGT CAGATCTCTC CCTTCTTACC ATCAATCTTT GAACCTTTCG 
    TTCTATTGAA GAAACTGTTT CATCTCTGGT CTGTATTGAA TTACAGAGGT 
    GCTAACATCG ACTGTGGGAA TGAAAGATGA

AT3G04620.1

Model type
Protein coding
Short Description
Alba DNA/RNA-binding protein
Computational Description
Alba DNA/RNA-binding protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775), Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related (InterPro:IPR014560); BEST Arabidopsis thaliana protein match is: Alba DNA/RNA-binding protein (TAIR:AT1G29250.1); Has 160 Blast hits to 160 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR