1. Home
  2. Mutant Lines
  3. GT19668

GT19668

CSHL Arabidopsis genetrap mutant lines

Original: GT19668

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19668

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10271649 [Map]; Strand: c
      • AT2G24160.1 - [+] show detail - pseudogene, leucine rich repeat protein family, contains leucine rich-repeat ...
        Distance: -1037; Region: intergenic
      • AT2G24165.1 - [+] show detail - pseudogene, similar to HcrVf3 protein, blastp match of 37% identity and 5.1e-...
        Distance: 1023; Region: intergenic
    Flanking Genome Sequence: GT19668 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACTAT TATTATTGCC 
    TAGAAGTTCT ACCTAATTTT TAATCTCTTA TCTCACAACT TCCTTAAAAT 
    CTGCTCGTGA GCTAACAAAC ATAGTCACAT TCCCATACAA ATTAAATCCT 
    CCTACAATAG TCTTGCACTA CTCTAAAATG AACACCTTAT CATTATAATT 
    GCAGTGTCAC TACGATATAG ATGGAATAAT TTGAGTATGG ATACATATAT 
    ATTTTAATAA ACAAAAAAAT ATGGGAAATG AGGACATGAA AGATTGCTAT 
    GTTGATAACA GAAACAGTGG GTTTGATTAT TGCAAATAAC TAAAATTTCT 
    AGTGAAATGG AGTATAAACC TTGACTTGCT TTCTTTGTTC ACTTGGATCC 
    CAAGGCAAAC AATAAACACA ACATAAAAAA AAAGATTGTT TATACATTAT 
    CAAGGTATAA TTATTAAGTA TTTGTCTGTT GAAAAACATG CTAAACTGGC 
    CGGCAAGAGC TGCTTTTTCA GAGCCATAAA GCCATCTAAT ATTCAATGCA 
    AAACCAATGA AATTCTACTT ATGAGATTTT GGCCATTCCA CTGAATCTCT 
    CTAGTTATCC ATTACTACCA GAAAGTAAAT CAAGAAAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10271215 [Map]; Strand: c
      • AT2G24160.1 - [+] show detail - pseudogene, leucine rich repeat protein family, contains leucine rich-repeat ...
        Distance: -603; Region: promoter
    Flanking Genome Sequence: GT19668 - 5-prime edge 
    GCAAATAAGG GGGAAGGAAT GAGTCAAGGG TCTATGGGGC ACAAATCACA 
    AAGACTTAGA GGGGATAAAA AGACTGATAA GTTTGTAAAG ATTTCCCATC 
    AGGGTTCACC AATCTCCAAT AACTCGTTTT TGAAACAAAC GTCTTTGAGG 
    GTAATTTTCC TTTTTTTTGG ACCATTGGCC CCTTCCAGGA ACCCCTAAAT 
    TCCCCCCTCC CGGACTCTTC CATAGGAAAA ATTTTGCAGG CCAAAAAGCC 
    CAAGGGAAAG GTGGCGCCCC CAAACCCATG GAAACGGAAA AGGCCCAATT 
    CGTTTTCAAG GCCACATTTC CCAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10271521 [Map]; Strand: c
      • AT2G24160.1 - [+] show detail - pseudogene, leucine rich repeat protein family, contains leucine rich-repeat ...
        Distance: -909; Region: promoter
    Flanking Genome Sequence: GT19668 - 5-prime edge 
    TGGCAGTGCC GTCTCGATAT AACCTATGGC AAAACCAAAC AAAAATTAAA 
    CCTCTTAGTA AAAAAAAAAG TTAAAAAAAT TTGGACTTTT CTTCTTTTAG 
    GGTTTTTCTG AAATTAAAAT TGGACCCTTG GCATTTGCCT ACCTTGCCTA 
    TAGGTAAAAG GGGGAAACAA TGCTGACCAT TGGGACACCT TTTACACGGG 
    AAATTTTCCG TTTTGTCTCC AATTGATAAA TTTTGTTGGG AATTAACCTA 
    TGAAATTACC TAACGAACGT TTCTTCCAGG AATGAGTCAA GTCAAAACAG 
    TATGGGGCAA AAAAGGGGGA AGGAATGAGT CAAGGGTCTA TGGGGCACAA 
    ATCACAAAAA CTTAAAAAGG ATAAAAAAAC TGATAATTTT GTAAAAATTT 
    CCCATCAGGG TTCACCAATC TCCAAAAACT GGTTTTTGAA ACAAACGTCT 
    TTGAGGGTAA TTTTTCTTTT TTTTGAACCT TTGGCCCCTT CCAGAAACCC 
    TTAAATTCCC CCCCCATGAA CCCTCCCAAA TAAAAATTTT TGCAAGTCAA 
    AAATCCCAAG GAAAAGGTGG CTCCCCCAAA CCCTTTGAAA CGAAAAATGC 
    CCATTTCTTT

AT2G24160.1

Model type
Pseudogene
Computational Description
pseudogene, leucine rich repeat protein family, contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; contains some similarity to Cf-4 (Lycopersicon hirsutum) gi|2808683|emb|CAA05268; blastp match of 37% identity and 8.4e-98 P-value to GP|2808683|emb|CAA05268.1||AJ002235 Cf-4 {Lycopersicon hirsutum}
Link
InterPro Scan - TAIR

AT2G24165.1

Model type
Pseudogene
Computational Description
pseudogene, similar to HcrVf3 protein, blastp match of 37% identity and 5.1e-32 P-value to GP|14330718|emb|CAC40827.1||AJ297741 HcrVf3 protein {Malus floribunda}
Link
InterPro Scan - TAIR