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GT19670

CSHL Arabidopsis genetrap mutant lines

Original: GT19670

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19670

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 31356 [Map]; Strand: c
      • AT4G00070.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19670 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TATCCATCAT 
    CACTATAAAC AGTTTTTTCT GGAATTTCAT TTAAATCAAA CAAAAATTCA 
    TTCTCTTCAC TTAACAATGA CATACTCAAA TAAAAATTTG GAATTGTGAA 
    GAAAATTAGA AATCATTTTT TTTTTAAAAC TTACATAAAC ATGAAGGATT 
    CAAAAAAGTT TTAGTTTGGC TCCGAGGTAA AATTTTTGAA ATTTTTTGTT 
    TAAAATTAAT TATGTAAGGG TTGCCCAAAA AAAATAATCA ATTATGTAAA 
    AAGTTGCTCC ATTTTTTCAA GAAATTGGGG TTGTTTGAGA GTTTAAGGCC 
    GAACCGTTAA AAATAACTCT TAAATGGTTT AAATACCTTT ACTGGATGGT 
    TTTTATAAAA AAAAAGTTTT GTAAATAACG GGGCAAAACC TCAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 31301 [Map]; Strand: c
      • AT4G00070.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19670 - 5-prime edge 
    TCCTCCTACT TTCTCCCTGA TGATGGAGAT GAATTTTTGT TTGATTTAAA 
    TAAAATCCCA CCAAGAGAAG AAACTGTTAA CAGTAGCGAT GAAGATTTTG 
    CAGGTATTTG TTTTTTGTAT TAAGCTATGC CTTTTCTAGG AAAATAAATC 
    ATGGACACTT TAAATTTTCT TTTTGCATAA TTAAAATGAA GTTTGTTAGT 
    GATTAATTTT TAGTTCCTAT TTTTTCTCAA TTAGCTCCCA TTGACTAGTT 
    CACGTTCGTA TTACATCTCG AAAACAAACG AACATTATAT TATAAATAAA 
    TGGAATTTTT ATTTTATTTT TTTATTTGAC ATGCATGTAT GATTGTAATA 
    ATTACTTTCC ATTTATTTTC GATATGTCAA TCAAAGAAGT CAAATCGGCA 
    GAAGGTTATA CAGACCACCT CCATCGACGT AATCAAGCCA CAAAACGAAA 
    AAAAGCTCCG GAAGCGACCA AAGGTATTTA GGGTTTTTTG CTAGTTTTTG 
    TTCAGTTTTT TTTCCGAATA GATTAGGGTT TCATATCACT CGACTATTTG 
    TTTTCTAATA AGGGTTTACT CGAATAGAAT AGGGTTTTTG TATATTTTTG 
    GGTTTGACTT GAGTTTATGC TTGTTTGATT CTTAAGTTCC CAAGGTTGGA 
    TATCGATATA AGGGAACAAG ATTTCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 31266 [Map]; Strand: c
      • AT4G00070.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT19670 - 5-prime edge 
    TTTGTTTGAT TTAAATAAAA TCCCACCAAG AGAAGAAACT GTTAACAGTA 
    GCGATGAAGA TTTTGCAGGT ATTTGTTTTT TGTATTAAGC TATGCCTTTT 
    CTAGGAAAAT AAATCATGGA CACTTTAAAT TTTCTTTTTG CATAATTAAA 
    ATGAAGTTTG TTAGTGATTA ATTTTTAGTT CCTATTTTTT CTCAATTAGC 
    TCCCATTGAC TAGTTCACGT TCGTATTACA TCTCGAAAAC AAACGAACAT 
    TATATTATAA ATAAATGGAA TTTTTATTTT ATTTTTTTAT TTGACATGCA 
    TGTATGATTG TAATAATTAC TTTCCATTTA TTTTCGATAT GTCAATCAAA 
    GAAGTCAAAT CGGCAGAAGG TTATACAGAC CACCTCCATC GACGTAATCA 
    AGCCACAAAA CGAAAAAAAG CTCCGGAAGC GACCAAAGGT ATTTAGGGTT 
    TTTTGCTAGT TTTTGTTCAG TTTTTTTTCC GAATAGATTA GGGTTTCATA 
    TCGATTTAGT TTTTGTTTTC TAATAAGGGT TTACTCGAAT AGAATAGGGT 
    TTTTGTATAT TTTTGGGTTT GACTTGAGTT TATGCTTGTT TGATTCTTAG 
    TTTCTCAAGG TTGGATATCG ATATAAGGGA ACAAGATTTC ACTGGCTTGT 
    TCACTTCTTC TTCGTTGATT CTTAA

AT4G00070.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G36950.1); Has 668 Blast hits to 668 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 45; Plants - 506; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR