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GT19675

CSHL Arabidopsis genetrap mutant lines

Original: GT19675

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19675

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5671245 [Map]; Strand: w
      • AT3G16640.1 - [+] show detail - translationally controlled tumor protein
        Distance: -403; Region: promoter
      • AT3G16650.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19675 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACCGCT 
    GAGGAAATTG GCCATGGACG GGGGAGAAAA TTTCACGAGC TCGTCTAACA 
    GATTTTAGAC TGAGTTTTTT CAGTGACTGA GTTTCGACCT CCCTGTTCAA 
    AGCTATCATC GTCATTCTAG GGTTTTACAC GAACAATCAG AAACAGAACG 
    AGAAAGACGG AAGAGAAGAG AGGGAAATAG GATTTTATCC GACCCGAACA 
    CTATTTATAC GTAGCCCAAC ACTCGAATCC CCACCCGTTT GCCCAAACCC 
    GGCTCATTAA GCGTCGGTTC AGATTTATTT CCTTTATTTA AAAAAAAGGA 
    AAGGGTAAAA AATAGAAAAT TGGAAACAGT TAAAGCCCAA AATTGTAATT 
    TACCGAGAAT TGTAAATTTA CCTGAAAACC CTACGCTATA GTTTCGACTA 
    TAAATACCAA ACTTAGGACC TCACTTCAGA ATCCCCTCGT AGCTGCGTCT 
    CTCTCCCGCA ACCTTCGATT TTCGTTTATT CGCATCCATC GGAGAGAGAA 
    AACAATCAAT AAGCGACCAT GTTGGTGTAC CAAGATCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5671321 [Map]; Strand: w
      • AT3G16640.1 - [+] show detail - translationally controlled tumor protein
        Distance: -479; Region: promoter
      • AT3G16650.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT19675 - 5-prime edge 
    CCTGATCCTG AAAGGTTAAT CAACAGTTTC GCTTGCAATG TCCACTTTTT 
    TTTCTCGAAA TTTCTCAAAA TTTTTATGTG TATTGACGAT TTCTTCTTCT 
    TGTCTGTTTT TGTTCATCTC ACTCGA

AT3G16640.1

Model type
Protein coding
Short Description
translationally controlled tumor protein
Curator Summary
Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well.
Computational Description
translationally controlled tumor protein (TCTP); INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Translationally controlled tumour protein (InterPro:IPR018105), Mss4/translationally controlled tumour-associated TCTP (InterPro:IPR011323), Translationally controlled tumour protein, conserved site (InterPro:IPR018103), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: Methionine sulfoxide reductase (MSS4-like) family protein (TAIR:AT3G05540.1); Has 867 Blast hits to 867 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 452; Fungi - 160; Plants - 158; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G16650.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: pleiotropic regulatory locus 1 (TAIR:AT4G15900.1); Has 78035 Blast hits to 32558 proteins in 858 species: Archae - 78; Bacteria - 9289; Metazoa - 31871; Fungi - 16785; Plants - 9585; Viruses - 0; Other Eukaryotes - 10427 (source: NCBI BLink).
Link
InterPro Scan - TAIR