1. Home
  2. Mutant Lines
  3. GT19721

GT19721

CSHL Arabidopsis genetrap mutant lines

Original: GT19721

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19721

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT19721 - 5-prime edge 
    ACCACTAAGC CTTTCAACTT TTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11385 [Map]; Strand: c
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -930; Region: promoter
      • AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: GT19721 - 5-prime edge 
    TCTTGGGGAT GTCTAGGATT TTGAACCGAA TTCAAGTTTG AGGCTTGATA 
    ATATTTTTAT GCGTAAACAT GAAACAGAGA CATGGAGAAT GCATATATCA 
    TGAAGCATCA AGTATACAAT AGAGGCAATC ATGGATCAAA CGGTGTTTAT 
    GGTATCAGTA AGACAGCGGA GAATGCAACC GGGACCAACT CTCTCTCTGA 
    GTTTCCCCGA GCCATCAAGG CTACAAACAT CTCGACTACA AGGGCCAATC 
    AAATTACATA ATCACGGAAA AAACAAGGAT AGATACAAGC AAACCTAACA 
    CTCGAGCAAT AATTTGAGTA ATAGAAACAA GAAACCAGAA ATCGAAACGA 
    AACGGAACGA AACACAAAAT TTCCTAATTA ATCTTGTGTT TAATTAAGAA 
    AAGAAAACAC AAAAAAGTTG AAAGGTTTAG TGGTGCATCC ACGTAGCAAG 
    ACATTTTAGG TGTACGTCGA CCATATTGTT GGCCGTTTAT AGAGCATCAT 
    CCACTCTCCT CGACGAGCAA GATCATGCCG CCTCTGGATT

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00026.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR