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GT19723

CSHL Arabidopsis genetrap mutant lines

Original: GT19723

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19723

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11374 [Map]; Strand: c
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -919; Region: promoter
      • AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: GT19723 - 5-prime edge 
    TCTAGGATTT TGAACCGAAT TCAAGTTTGA GGCTTGATAA TATTTTTATG 
    CGTAAACATG AAACAGAGAC ATGGAGAATG CATATATCAT GAAGCATCAA 
    GTATACAATA GAGGCAATCA TGGATCAAAC GGTGTTTATG GTATCAGTAA 
    GACAGCGGAG AATGCAACCG GGACCAACTC TCTCTCTGAG TTTCCCCGAG 
    CCATCAAGGC TACAAACATC TCGACTACAA GGGCCAATCA AATTACATAA 
    TCACGGAAAA AACAAGGATA GATACAAGCA AACCTAACAC TCGAGCAATA 
    ATTTGAGTAA TAGAAACAAG AAACCAGAAA TCGAAACGAA ACGGAACGAA 
    ACACAAAATT TCCTAATTAA TCTTGTGTTT AATTAAGAAA AGAAAACACA 
    AAAAAGTTGA AAGGTTTAGT GGTGCATCCA CGTAGCAAGA CATTTTAGGT 
    GTACGTCGAC CATATTGTTG GCCGTTTATA GAGCATCATC CACTCTCCTC 
    GACGAGCAAG ATCATGCCGC CTCTGGATTC T

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00026.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR