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GT19729

CSHL Arabidopsis genetrap mutant lines

Original: GT19729

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19729

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12927620 [Map]; Strand: w
      • AT2G30320.1 - [+] show detail - Pseudouridine synthase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT19729 - 5-prime edge 
    AGAAGGGTCG TCTCTTTGAA TCTGTAAGCC TGAAAATGGA GAACAAAGTC 
    ACAAACTTTA TACAGAAGAA TGCTTCAATT CATAATTAAA ACCAATCAGG 
    AACTAAACAT TCTTACCTCT GTAATCAGTA CCAACGTATC CAATTCGAAT 
    GACGACCTTC TTCTTCCGAT ATGATTCCCA TTTATCGGCG AGAAAGTTGT 
    CGGAAGAAGG CGGTGAGAGT GAAGTAGAAG ACGGCTGAAA TGCGGCGGAG 
    GAAGAGAATC GTAATAACGC TGGTGTGACC CGAATAAGTC GGGTCGGGTA 
    CCAGAAGACC CGCGACGGAA TTGGAATTCG TAGAAACGAG ACTGCCATGA 
    GAAATAAAAC TTGGCTAAGT TTCTAGAACC GGCGCTAACA TAAAAGCTCC 
    GGTGATTTCT TTTGTCAAAC TACGTGCCGT TTTGTCAATT TAAAACACGG 
    TTTTGTTATA TATATTGTAA AACATCAGGA CGTTGGAACT GAACTATATA 
    TCAACGTGTA GTTTTCTTTT TTATATATCC TATGCACGAT CGCGTTTTGC 
    GATCGTCTTT TAGAACTGAA CATTTCATAT TGACAATTGA TTCCTACGTA 
    GATCTAAACT TCTCTACCTT ATTATCTA

AT2G30320.1

Model type
Protein coding
Short Description
Pseudouridine synthase family protein
Computational Description
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G76120.1); Has 2235 Blast hits to 2027 proteins in 681 species: Archae - 89; Bacteria - 873; Metazoa - 390; Fungi - 255; Plants - 163; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink).
Link
InterPro Scan - TAIR