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GT19735

CSHL Arabidopsis genetrap mutant lines

Original: GT19735

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19735

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23222091 [Map]; Strand: c
      • AT3G62770.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -859; Region: promoter
      • AT3G62770.3 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -859; Region: promoter
      • AT3G62780.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19735 - 5-prime edge 
    TGCCGGGAAG TCCACCCACA ATGTATCAAT CTATATTTCC TGGCTTATCA 
    TGTCCACCAG AAGGTTATTC AACGGTGGCT CCGCCGCTGA CACAACCGGG 
    ACTATATCCA CCGATGAGTC CTTACAGATA TTAATTGATT GTCAACGTCT 
    GGAAGCCTAG TCGTCGGTTT GGAGTTTTGT TGATTTTATG TAACTTATGA 
    TGTCATCAAT TCCCCCAACT TGTGTGTGTT CTTTTTTTTC CACCATCAAC 
    ATAAAAATTG TTGTGTTTTT TTCTCTCTTT CTAACAAAAT CACACCCTAA 
    ATTGTTGCGT TCTTCTCTCT CGA

AT3G62770.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Curator Summary
Required for autophagosome formation during nutrient deprivation and senescence.
Computational Description
AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 1516 Blast hits to 1443 proteins in 266 species: Archae - 0; Bacteria - 93; Metazoa - 578; Fungi - 450; Plants - 210; Viruses - 2; Other Eukaryotes - 183 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62770.3

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Curator Summary
Required for autophagosome formation during nutrient deprivation and senescence.
Computational Description
AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 213 Blast hits to 211 proteins in 57 species: Archae - 0; Bacteria - 30; Metazoa - 48; Fungi - 45; Plants - 63; Viruses - 2; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62780.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G16510.1); Has 675 Blast hits to 575 proteins in 98 species: Archae - 0; Bacteria - 10; Metazoa - 206; Fungi - 19; Plants - 326; Viruses - 29; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR