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GT19755

CSHL Arabidopsis genetrap mutant lines

Original: GT19755

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19755

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14666604 [Map]; Strand: c
      • AT2G34760.1 - [+] show detail - pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 ...
        Distance: -528; Region: promoter
      • AT2G34770.1 - [+] show detail - fatty acid hydroxylase 1
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT19755 - 5-prime edge 
    AACACCAGAG GTCCTTTTCA ACAGGTCGTA TAGGTAAATT TACAGATCCT 
    CTTCACTATC ATAACCAGAT TAGAGGCCTG AATCTTAAGC ATTACTTCTT 
    AAATGACTAA GAAAACGACA G

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14666337 [Map]; Strand: w
      • AT2G34760.1 - [+] show detail - pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 ...
        Distance: -261; Region: promoter
      • AT2G34770.1 - [+] show detail - fatty acid hydroxylase 1
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT19755 - 5-prime edge 
    TGTGTGTTTT TTTGTTTCCT TGATGTTAAC TTGTGAGTTC CTTTATTTGG 
    GTAGTTTACT TGTATATATA TTTGGTGGTG GGTCCTGGAG GGAAATGAGT 
    GAGAGGGAGC TCTGTTCATA CATTCTATGT TTTTAAATGA TTAGTATTTT 
    TCTTTCATCT AATACTTGCT TTTTGTGGTA GGAATTTCGA TTTTTGGGAC 
    TAATTTATCG AGTATATATA ATTGGATAAA TGAGTTTGGT ATTAATATTA 
    AGAGCAATTA GGTTGGTTAT CTTGCCAAAC AGTAAACCCC TGTCGTTTTC 
    TTAGTCATTT AAGAAGTAAT GCTTAAGATT CAGGCCTCTA ATCTGGTTAT 
    GATAGTGAAG AGGATCTGTA GATTTACCTA TACGACCTGT TGAGAAGGAC 
    CTCTGGTGTT TGTTACTA

AT2G34760.1

Model type
Pseudogene
Computational Description
pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 from (Zea mays); blastp match of 47% identity and 3.0e-15 P-value to SP|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin). (Maize) {Zea mays}
Link
InterPro Scan - TAIR

AT2G34770.1

Model type
Protein coding
Short Description
fatty acid hydroxylase 1
Curator Summary
encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.
Computational Description
fatty acid hydroxylase 1 (FAH1); FUNCTIONS IN: fatty acid alpha-hydroxylase activity, catalytic activity; INVOLVED IN: very long-chain fatty acid metabolic process, negative regulation of programmed cell death; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: fatty acid hydroxylase 2 (TAIR:AT4G20870.1); Has 784 Blast hits to 784 proteins in 354 species: Archae - 0; Bacteria - 388; Metazoa - 105; Fungi - 140; Plants - 78; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Link
InterPro Scan - TAIR