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GT19804

CSHL Arabidopsis genetrap mutant lines

Original: GT19804

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19804

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17312343 [Map]; Strand: c
      • AT2G41500.1 - [+] show detail - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related
        Distance: -4917; Region: intergenic
      • AT2G41510.1 - [+] show detail - cytokinin oxidase/dehydrogenase 1
        Distance: -2189; Region: intergenic
    Flanking Genome Sequence: GT19804 - 5-prime edge 
    AGGTAAATCG CCGTGAAGAT TGCAATAAGT AGATAGTTGG GCATTCAGAC 
    TGTTTAGATA GCATCATGAT GAGCACAATA TGAAATATTA AACTACCACC 
    ATTGCCGCAG AAATAAGGTT AAACTCCACA AAACGTATTT AATCATTACT 
    CTATGTATGT GATACATGTA TCTTATTTTT CTTCTCTCTC GA

AT2G41500.1

Model type
Protein coding
Short Description
WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related
Curator Summary
Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome. LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells.
Computational Description
LACHESIS (LIS); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), Pre-mRNA processing factor 4 (PRP4) like (InterPro:IPR014906), WD40 repeat (InterPro:IPR001680), Splicing factor motif (InterPro:IPR003648), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G05720.1); Has 96331 Blast hits to 36444 proteins in 930 species: Archae - 78; Bacteria - 11869; Metazoa - 38307; Fungi - 21059; Plants - 12275; Viruses - 15; Other Eukaryotes - 12728 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G41510.1

Model type
Protein coding
Short Description
cytokinin oxidase/dehydrogenase 1
Curator Summary
It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description
cytokinin oxidase/dehydrogenase 1 (CKX1); FUNCTIONS IN: cytokinin dehydrogenase activity; INVOLVED IN: N-terminal protein myristoylation, cytokinin catabolic process, meristem development; LOCATED IN: vacuole; EXPRESSED IN: lateral root, shoot apex, hypocotyl, root, flower; CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 6 (TAIR:AT3G63440.1); Has 6769 Blast hits to 6763 proteins in 1376 species: Archae - 168; Bacteria - 3882; Metazoa - 142; Fungi - 1302; Plants - 645; Viruses - 0; Other Eukaryotes - 630 (source: NCBI BLink).
Link
InterPro Scan - TAIR