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GT19818

CSHL Arabidopsis genetrap mutant lines

Original: GT19818

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19818

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6170673 [Map]; Strand: w
      • AT3G18035.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT19818 - 5-prime edge 
    CCTGCTCGTC ATCATGATCA AGAACTCTAT CTCCAACGAA TTTGGCTCTG 
    TTTCTTACTC AAATCTTGGA GCTTTCATGT TCACCTTCAT CTCTCTCGAC 
    TACAAAATCT TGACCGATTG GTGCAGTATC ACGACCATCA GAACCGTTCC 
    TCCTTGGACC ACCAGGTCCT CTCTTCGCCG ACTCTGTAAC CGGAGTCCGA 
    ACCGGAACAG GTGATTGAAC TTGCTGCTGT TCCCAGATTG GCTGTCCGTT 
    AACCTGGACT TGATTGGT

AT3G18035.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Curator Summary
A linker histone like protein
Computational Description
HON4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: high mobility group A5 (TAIR:AT1G48620.1); Has 2301 Blast hits to 2184 proteins in 377 species: Archae - 0; Bacteria - 351; Metazoa - 868; Fungi - 344; Plants - 528; Viruses - 17; Other Eukaryotes - 193 (source: NCBI BLink).
Link
InterPro Scan - TAIR