Home
Mutant Lines
GT19872

GT19872

CSHL Arabidopsis genetrap mutant lines

Original: GT19872

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19872

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Not mapped
Flanking Genome Sequence: GT19872 - 3-prime edge
```
CGTACCGCTA CCCGACCGGA
```
3 prime edge [+] show sequence
1. Chromosome: 4; Position: 11099 [Map]; Strand: w
  - AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
    Distance: -735; Region: promoter
  - AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
    Distance: -644; Region: promoter
Flanking Genome Sequence: GT19872 - 3-prime edge
```
CAATACGTTT GAGTAATAGA TACGAGACAC CAGAGATCGA TTCGAAACGG 
AACGAAACCC AGAATTTCCT AATTACTCTT GTGTTTTATT AATATAAAAA 
AACACAAAAA AGTTGATAGG TTTAGTGGTG CATCCGG
```

5 prime edge [+] show sequence

Chromosome: 1; Position: 28784323 [Map]; Strand: w
- AT1G76700.1 - [+] show detail - DNAJ heat shock N-terminal domain-containing protein
  Distance: -1075; Region: intergenic
- AT1G76705.1 - [+] show detail - calmodulin binding
  Distance: -2127; Region: intergenic

GCCTCAAAGC CCGAAGGTAA GAGACCTTGG ATTGTAATGA AGCTTTCTTC 
TCGCCCTGCT AATCCCATCA TAGCTCAAAG AGATTTCTTA TGCCTTGGAA 
CAAGCAACTC TTATTAGAAA GCTTCATAGC GTGAGGTACT TGTAATAATA 
GCTTGAGCTC TGTCCTCGCC ATTGGAGAGT ATATCCTCTG TTTCAAAAGT 
TCTGTATCAT AAAGTGGTTT AGTCACTCAA ATAAATAATT TACCTTTTGA 
TAAATTATTA CGAGAAATAT GACCGTTATT AAACTTTCTT AATAACGTTT 
CAATTGTTTT ACATCACAAT TGAATAAAAG GAAACAACGT TAACCTAGTC 
AGAAAGAACA AAAAAAGGAA ATCAGTCGAA AGATAACCGT CATCTCTTCT 
TTCATTAAGA AATCAAAAAT TTATGCACGC TCCTTTTTCT TCTTCCAAAC 
AGAAAAAACC CTAATTTTTT CAAGTTCTAT GTTCTTATAG AGAGAATCGC 
CGATGATCCT TCCGATATTG ACATAAGCTG ATGATCTCAA TAACTTCATT 
CTTCTTCTCT CTCGA

AT1G76700.1

Model type: Protein coding
Short Description: DNAJ heat shock N-terminal domain-containing protein
Computational Description: DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G21080.1); Has 22668 Blast hits to 22554 proteins in 3188 species: Archae - 168; Bacteria - 9129; Metazoa - 3918; Fungi - 2179; Plants - 2304; Viruses - 20; Other Eukaryotes - 4950 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G76705.1

Model type: Protein coding
Short Description: calmodulin binding
Computational Description: calmodulin binding; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 12 (TAIR:AT5G03960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00020.1

Model type: Protein coding
Short Description: BREAST CANCER 2 like 2A
Curator Summary: Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description: BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00020.2

Model type: Protein coding
Short Description: BREAST CANCER 2 like 2A
Curator Summary: Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description: BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link: InterPro Scan - TAIR