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GT19901

CSHL Arabidopsis genetrap mutant lines

Original: GT19901

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19901

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 153560 [Map]; Strand: w
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT19901 - 5-prime edge 
    GCGGTAGCTG ATCTTGCTGA CCTGCTCGGA ATAACGATGA TTCTGAACAG 
    TCTACAACCC GTTATATCAG GAGTTGCAGA AGGAGGAGGA TGGCAAGCAC 
    CGGTGGCTTA TATAAACTTG TTTTGTTACT ACACTTTTGG ATCACCTCTA 
    GGGTTTTTGT TAGGTTATAA AACAAGCCTT GGCGTAAAGG TAAAGCCACA 
    TAGCTTCCGG TCTAATTATT TTGGTTAAAG ATGACGAAAT TGCTTTATGA 
    GGTTTTTCAG GGGATATGGA TAGGTATGAT ATGTGGGATT AGTCTTCAAA 
    CT

AT4G00350.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link
InterPro Scan - TAIR