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GT19909

CSHL Arabidopsis genetrap mutant lines

Original: GT19909

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19909

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 236226 [Map]; Strand: c
      • AT5G01630.1 - [+] show detail - BRCA2-like B
        Distance: 0; Region: intron15 (CDS)
    Flanking Genome Sequence: GT19909 - 5-prime edge
    AAGTAAGTTA CTGTGGTGAA AACAAGTTCT TCTCTCTCGA CTATGGACTG 
    AAATGCATAT CAAAAAATCG TTACCATCAC TGTACTTTTG CATTAAGAGC
    ATCATCGATT AGCTTGTTCA ACTTTTTTCT TGTAGATTCT TAAAACAGTT
    ATCATTGTCT ACTACTGTGA CAGAGAACCG AGCTGACGGA GGGGAAAATA
    TACATAATGA AAGGGCTAGT ACCAATGAAC TCAGATTCAG AAACACTTTA
    CTTACATGCC AGAGGGTCAA GCTCAAGATG GCAGCCTTTG TCTCCAAAAG
    ATTCTGAAAA TTTTCAGTAA GTGGTTTTCT TTAGTAGACA CTGGAATCTA
    TCTCATTAAT TTGTTCAATT TCCCTGATGA TGTTTTCAGG CCTTTTTTCA
    ACCCTCGTAA ACCAATCTCT TTGTCAAATC TTGGTGAAAT TCCTCTGTCA
    AGGTTAATCT CAGTAGTCCA AGCTTTTTAT AAAACACTAT TTACCGCACT
    TTGCTAATCT ATACTCTATC ATCTCTAATT ATGTCCTTCA GTGAATTTGA
    TATCGCTGCG TACGTTGTAT ATGTTGGAGA TGCATACACA GATGTTCTAC
    AAAAGAAGCA GTGGGTGTTT GTGACAGATG GATCCACACA ACATTC

AT5G01630.1

Model type
Protein coding
Short Description
BRCA2-like B
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with with both Rad51 and Dss1(I) or both Dmc1 and Dss1(I) in a tripartite complex.
Computational Description
BRCA2-like B (BRCA2B); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BREAST CANCER 2 like 2A (TAIR:AT4G00020.1); Has 281 Blast hits to 210 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 134; Fungi - 18; Plants - 61; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR