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GT19923

CSHL Arabidopsis genetrap mutant lines

Original: GT19923

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19923

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3730556 [Map]; Strand: c
      • AT3G11820.1 - [+] show detail - syntaxin of plants 121
        Distance: 0; Region: exon1 (CDS)
      • AT3G11820.2 - [+] show detail - syntaxin of plants 121
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT19923 - 5-prime edge
    CTAAAGCCGT TAAAGATCTC CGGTCTAAAA TGGACGGTGA CGTTGGAGTC 
    GCGTTGAAGA AGGCGAAGAT GATTAAAGTT AAACTCGAGG CGCTAGATCG
    TGCCAATGCT GCTAATCGGA GTCTCCCTGG CTGTGGACCT GGTTCTTCCT
    CCGATCGAAC CAGGACCTCT GTCCTCAATG GTCTCAGGAA GAAATTGATG
    GACTCTATGG ATAGTTTCAA CCGATTGAGG GAGCTTATCT CGTCCGAGTA
    TAGAGAAACT GTACAGAGGA GGTACTTCAC CGTCACCGGC GAGAATCCGG
    ATGAAAGAAC CCTAGATCGA CTGATTTCCA CTGGTTAGTT TAATCTTCCA
    TTCATCTCTC TCGA

AT3G11820.1

Model type
Protein coding
Short Description
syntaxin of plants 121
Curator Summary
Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.
Computational Description
syntaxin of plants 121 (SYP121); FUNCTIONS IN: protein anchor, SNAP receptor activity; INVOLVED IN: in 13 processes; LOCATED IN: SNARE complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 124 (TAIR:AT1G61290.1); Has 2385 Blast hits to 2376 proteins in 301 species: Archae - 0; Bacteria - 6; Metazoa - 1106; Fungi - 480; Plants - 466; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11820.2

Model type
Protein coding
Short Description
syntaxin of plants 121
Curator Summary
Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.
Computational Description
syntaxin of plants 121 (SYP121); FUNCTIONS IN: protein anchor, SNAP receptor activity; INVOLVED IN: in 13 processes; LOCATED IN: SNARE complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 122 (TAIR:AT3G52400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR