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GT19961

CSHL Arabidopsis genetrap mutant lines

Original: GT19961

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19961

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16810488 [Map]; Strand: c
      • AT3G45775.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT19961 - 5-prime edge 
    AGATGATAAG ACAAAAGTTT GTAGGCTACG CAAATCTTTA TATGGCCTAA 
    AGCAGGCCCC GAGATGCTGG TTCGCCAAAC TTTCATCAGC CTTGCTAGAA 
    TACGGGTTCG AACAATCACG CAGTGATTAC TCATTATTCA CATATCACAA 
    AGGTACTACC AGTCTTAACA TTCTCGTTTA TGTTGACGAT TTAGTTATTG 
    CTGGAAGTAG TCTTAAAGCT ACAGAATCAT TTAAGGCTTA TCTCTCGTCG 
    TGTTTCCATA TGAAAGATCT TGGAGAACTG AAATATTTTC TAGGTATAGA 
    GGTTGCTAGA AATGCATCAG GCATCTATCT TTGCCAAAGA AAATATGCCC 
    TTGATATCAT TACAGAAACT GGTCAACTAG AAGCTAAGCC AGCAAATTTT 
    CCTTTGGAAC AAAATCACAA GCTAGCACTC TCCGTGTCTG CTCTCCGACC 
    TGATCCGAAA CCATATCGTC GTCTGTTAGG CCGTCTCATT TACTTGGGCG 
    TCACACGTCC GGATCTAGCA TTTTCTGTTC ACGTACTAGC TCAGTTTATG 
    CAAACACCAC GGTTCGATCA TTGGCTAGCT GCGTTGCGTC TTATCAGATA 
    TTTGAAATCT GATCCTGGCC AAGGAATATT GTTGCGGGCT GATTCTAATA 
    TTC

AT3G45775.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 9.5e-189 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)
Link
InterPro Scan - TAIR