GT1998

CSHL Arabidopsis genetrap mutant lines

Original: GT1998

Phenotypes

Morphological phenotypes

Original description

  • albino
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • desaturated green (PATO:0001272)

Original: GT1998

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19680991 [Map]; Strand: w
      • AT2G48120.1 - [+] show detail - pale cress protein (PAC)
        Distance: 0; Region: exon6 (CDS)
      • AT2G48120.2 - [+] show detail - pale cress protein (PAC)
        Distance: 0; Region: exon6 (CDS)
      • AT2G48121.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (...
        Distance: -646; Region: promoter
      • AT2G48121.2 - [+] show detail - LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Ribonu...
        Distance: -826; Region: promoter
    Flanking Genome Sequence: GT1998 - 3-prime edge 
    GACCGTTACC GACCGTTTTC ATCAATGTCG AATCCCGGTG GCATTAGAAT 
    GCTGAAGGGG TCTTCTCGGG GGAAGGTCTC AGCCATTCGT TTTCTGCAGT 
    CCTTGAGCCA AGCATCGTCT TCAAAGCCAT CATGCATGTT TAGAAGATCA 
    TTCAGCAGTT TCATTGCAGG ACTTGCTTGC CGTTTTAAGA TCTCTGTCTG 
    GATAGAGAAA CACCCGATAT AAGGATTCAC TTTCACCTAA AGCTGACTAA 
    TACGAGTTGA TAATCTTCCT TGACAAATGA GTAAGTTTGA AGATGGTGAT 
    ATAAAGCATC AGCAGCTCAA GATCTTATAG CATAGAAAAG AATGAAGAGA 
    AACAATTACC TCGACTCTTC TATACAAAAG ATCAAGACTT CTGATGGCGT 
    CCTTCTCATC CTGAAAGTAA GCAACACAGG ATCTAAGGGA ACATTTCATC 
    ATGAAAACGC ATAACTCACA AGGAAAAAAA TGTTACATCG CGCCTAGCAA 
    GGTCAANCCG GTTCCATATG ATCATGAGGA CAAGCTCGTC AAGTTCTCCT 
    TTCTCGGCTG CTTCTTCAAT TCTCTACAGA AATTGTCTTA TACATAATAA 
    TAATAATTGC CTGCTTG

AT2G48120.1

Model type
Protein coding
Short Description
pale cress protein (PAC)
Curator Summary
The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.
Computational Description
PALE CRESS (PAC); Has 504 Blast hits to 478 proteins in 108 species: Archae - 0; Bacteria - 11; Metazoa - 283; Fungi - 39; Plants - 50; Viruses - 8; Other Eukaryotes - 113 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48120.2

Model type
Protein coding
Short Description
pale cress protein (PAC)
Curator Summary
The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.
Computational Description
PALE CRESS (PAC); Has 299 Blast hits to 297 proteins in 71 species: Archae - 0; Bacteria - 13; Metazoa - 176; Fungi - 25; Plants - 43; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48121.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT4G37510.1).
Link
InterPro Scan - TAIR

AT2G48121.2

Model type
Protein coding
Computational Description
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT4G37510.1).
Link
InterPro Scan - TAIR