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GT20010

CSHL Arabidopsis genetrap mutant lines

Original: GT20010

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20010

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2928302 [Map]; Strand: w
      • AT3G09530.1 - [+] show detail - exocyst subunit exo70 family protein H3
        Distance: 87; Region: intergenic
      • AT3G09540.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 509; Region: intergenic
    Flanking Genome Sequence: GT20010 - 3-prime edge 
    CCTCATAAAT ATGCCATGTT CCTTGTTGTA AGTCGTAACT TACACCTTCC 
    ATGACATCAA TTAATTAAGT TGTTACAAAA AAATATCAAA ATACTGTAAT 
    AGGGAAAATA AATTTTGAAA ACATTATTTT TTTCCCTTTC AAAATCTTCT 
    GCATGACAAA GATCGAGTCT TTCGTACAGG AGTTGGAGTA GGTGTTGTAA 
    CACAAAAATC TGGCGTACAG ACATATCCTT TCTCCGAAAT ACCCTTTCCG 
    CTAAACAGCT CCGACAAGTG GTTTCCAATA TCTTCAGGGT TATATCGGAC 
    CTTCCACTGG CCTTCCGTTC CCGCTAACAT AACGGCATTT CTATGAGCGT 
    TGTAAAAATC GCGGTAAACC GGTAACAGTT TTCTCCCGAT CGAAATTCTC 
    ATCTCGTCCA ACAGCTTCGG ATCTAGTACG ATGCACTCAC TCTGTGCCTC 
    GCACGTGCTC TCGAAAGTCT CGTTGAACTT TTTGAATTGC ATCATCGCTT 
    C

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2928471 [Map]; Strand: w
      • AT3G09530.1 - [+] show detail - exocyst subunit exo70 family protein H3
        Distance: 256; Region: intergenic
      • AT3G09540.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 340; Region: intergenic
    Flanking Genome Sequence: GT20010 - 5-prime edge 
    TCTCCCTTCT ATATGTGTAT GTAGAGAATC TTATGGTCCT TTTTTGGTGG 
    GTGAGGACCG TTAGGTAGCG AATAATCCAA GTCAAGTCAC ATTACAAGAT 
    TTGTAGAATC CTAATTAAAT ACCACAAATA CTTTTGTACA ACTAATATTC 
    AACGGAAGAT GACATTGACA GAACCGAAGA GCCACACATT TTGTAGAATC 
    ATGACAAATA ATAGATAACT CAAAACCTTA AAATTGCATA AAAAGAATAT 
    TTGATATGTT ACATAAAATT AGTGTACATG TTAATTCATA TTTACACGAA 
    GTTTCGGATT TGAGTCCTAA ATGCTTTTGA TGATACTCGA TCTTCTTAGA 
    GGGACTAAAT TAAATCATCC CTTCCACACG AATCAAACTT ACTAGTGATA 
    TACAATTTTC AACCTTTTTA GAGGGACCGA GTCACCGAGC CAACCACCAC 
    AGACTTGTTA TTCATCTCAC GCAACTAATT CATACATACA ACAAACAAGC 
    TCAAAATACA CAATAACACA AATCTTTTTT TCTCTTTCTA TATTTATTAG 
    TTGAAACTAA TATCTCAACT TTTGAATTGG AAAA

AT3G09530.1

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H3
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H3 (EXO70H3); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H4 (TAIR:AT3G09520.1); Has 786 Blast hits to 774 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 29; Plants - 616; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09540.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G55140.1); Has 1920 Blast hits to 1910 proteins in 308 species: Archae - 2; Bacteria - 1025; Metazoa - 0; Fungi - 186; Plants - 681; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR