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GT20025

CSHL Arabidopsis genetrap mutant lines

Original: GT20025

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20025

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11647827 [Map]; Strand: c
      • AT4G21960.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT20025 - 3-prime edge
    AGCTTCGATG CCTTCTCTTG CGGACAAGAC GAGAATGTCA GAACATGAGA 
    CAACACCAGG ACACTCCCTC TCGAGAGCTT CCTTGATCTC CTCGATGTAC
    CTAAAGTTTC TAAGTCCGAA GCTCCTGTCG TGTTCTTTCT CTCCTAGCTC
    TCTTCTTGTC GAATCCAGCA AAAGCGACGC ATCACATGAC TGTTTAACCC
    AAAAAAACAG AGCAAAACAG AGTAAAATCT TTAGATCTGT TTTAGGTAAA
    ATATCAAAAC CCATCATGCA AACATATGAA AGATCATTGT AAGAGAGAGA
    GTTTTCGGAC CTCAACGGCG CA
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11647696 [Map]; Strand: c
      • AT4G21960.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT20025 - 5-prime edge
    AGTCTCTTTT GGGCCTTATT TTGTTCTTCG TCTCTCTCGA CTACTGCTTG 
    CTGTTTTTTT CCTTTTTTGA CAAAACTGTG TGGGGTTGGT GTAGGTAGGA
    GGACCTTATA TTCCTTTGAA GACAGGAAGG AGAGATGGAC TTAAAAGCAG
    GACGGATATG CTCGAGTCAT ATCTTCCCGA CCACAACGAG AGTATCTCCG
    TCGTTCTTGA AAAGTTCAAA TCCATCGGTA TCGACACTCC CGGCCTCGTC
    GCCCTCCTAG GTACCTTTTA TCTTTCTCAT CCTTGATTAT TTGTCACTAG
    GCTCCGGAAA AAACGTAACG CTTGAAATTA AAAACTCTTG ACCAACCGAG
    ATATTTTGTT GCTGCTGCCT TAGATTAAGG GTATTTCAGT CAATTTACTC
    ATGCATGAAA CACTCTTATG ACTAATGAAC CACTACTAAA GCTAACTTTA
    TTGAATCACA AAAGGAGTGT ATGCGATCTG AGTTGAACTT TGAAAGTTAT
    CCTTATCCGA TCTATCACTA GTACTAACAA ATAAGACAGG ATAATCCTTG
    TTTATGCCCC GGTACAATAG CCTAGCACAA GGTTATTTTG GTCAATAAAC
    TCATGCATGC TTAAACATAC TAATCAAACT AATTGACTTT ACTCTTATGG
    GATCTGAATT TAG

AT4G21960.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Curator Summary
Encodes AT4g21960 (AT4g21960/T8O5_170).
Computational Description
PRXR1; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G37130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR