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GT20033

CSHL Arabidopsis genetrap mutant lines

Original: GT20033

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20033

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1336260 [Map]; Strand: c
      • AT2G04040.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT20033 - 5-prime edge 
    GATCTCGGTC ATGGTCGCTG GCCACAACGG CGAGCTCCAG CTCTCCGGTG 
    TCGCTCTTGC AAACTCCTTC ACAAACGTCA CCGGTTTTAG CATTATGGTA 
    ATTATGCTAT GACTCTAACC AACTCAAGAA TCAAATATTC GACTCTCTCA 
    AGTATTGAAA ACACTTCAAT TATTTTTGTG CAGTGTGGAT TAGTGGGTGC 
    ACTTGAAACT CTTTGTGGCC AAGCTTATGG AGCCAAACAA TATGAAAAAA 
    TCGGAACTTA CGCATACTCT GCTATTGCTT CCAACATACC AATTTGTTTC 
    CTCATATCAA TTCTCTGGCT TTACATCGAA AAGATCTTGA TTTCTCTCGA 
    ACAAGACCCT GAAATTTCAA GAATCGCTGG CTCCTACGCC TTTTGGCTTA 
    TACCGGCTTT ATTTGGCCAA GCGATTGTCA TACCACTGTC CCGGTTTCTG 
    CTAACACAAG GGTTGGTTAT TCCTCTGCTC TTCACTGCCG TGACCACCCT 
    TTTGTTCCAC GTTTTGGTTT GTTGGACTTT GGTTTTCTTG TTTGGTCTGG 
    GATGTAATGG ACCTGCCATG GCTACAAGTG TGTCTTTCTG GTTTTACGCT 
    GTGATACTCT CATGTTATGT GAGATTCTCC AGCTCTTGCG AGAAGACTCG 
    CGGATTTGTA TCCCGAGATT TTGTGTCTTC TATCAAGC

AT2G04040.1

Model type
Protein coding
Short Description
MATE efflux family protein
Curator Summary
AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds, including CD2+.
Computational Description
TX1; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04080.1); Has 9657 Blast hits to 9581 proteins in 1940 species: Archae - 182; Bacteria - 6693; Metazoa - 146; Fungi - 326; Plants - 1322; Viruses - 0; Other Eukaryotes - 988 (source: NCBI BLink).
Link
InterPro Scan - TAIR