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Mutant Lines
GT20037

GT20037

CSHL Arabidopsis genetrap mutant lines

Original: GT20037

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20037

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 2947368 [Map]; Strand: c
- AT3G09600.1 - [+] show detail - Homeodomain-like superfamily protein
  Distance: 0; Region: exon4 (CDS)
- AT3G09600.2 - [+] show detail - Homeodomain-like superfamily protein
  Distance: 0; Region: exon4 (CDS)

ATGAAGAAAA CAAAAAGGAT CTTTGAATGG GCATGCCTTC TGCTCCACGA 
AGAGGAGCAA GGTCATGTTG GGGTGAAATA ACTCTGTTTA GCAGCATTGA 
GGCATCATCC CATGAAGCAT ATCCCGGCAT GTCGCCATTT CGCGTAGTAC 
TAAAAGACGT GGAAACTTGA AGTGGCATTT GAGCTGCAAG AAAATGTGAG 
TTAAAAACTC AACTCTATAA CCAAACTAAG AAGTATTATA AAATATTCGA 
ACCATTCTTT GATGCCTTTT GAGGATACGG ATGAGCTGCT TTGCGCTTAG 
GTCGAGGAGG TGGCACATGA GCTAATGTCC CGTTTTTCTG AACCTTGAGA 
AAGTATTTTT GAGCATGACT CCTTATCTGC AGTACAAAGT CAAATAAGTT 
GAAAACATTG CCACAAAGTA ACTGCGACCA AAAATGCAGA GTAAGCTATT 
TTAAAACCTG AATCACAGTC TTTGAACCAA CAAAATCTTC AATCTTCTT

AT3G09600.1

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Computational Description: Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.3); Has 1480 Blast hits to 1470 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 6; Plants - 1120; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G09600.2

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Computational Description: Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR