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GT20038

CSHL Arabidopsis genetrap mutant lines

Original: GT20038

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20038

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT20038 - 3-prime edge 
    AGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATG TTCTTCTCTC 
    TCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 68367 [Map]; Strand: w
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 2888; Region: intergenic
      • AT4G00165.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 906; Region: intergenic
    Flanking Genome Sequence: GT20038 - 5-prime edge 
    TGACAGAATC GTGCTTTGCC ATAATTAGAG GAAGAACAAA AAAGTCAGCC 
    ATTTATATTA ATCTTGTCAA ACATTAATTT ATATTGAAGG CTGACGTGTT 
    AGAGTTTGTA TGCATATAAC CATATATAAA TGATTGCGTC GTTCATTTTG 
    TATAAGATTT TAGGATAATG ACTAGTTAGA TTAGACAAAA ATTGATCAAT 
    TATTATTAGG AGATCACATG GGACTGATAA GGATAAAGAA AAATAGAGAA 
    GATTTCTTCT TCTCTCTCGA CC

AT4G00160.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00165.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: N-terminal protein myristoylation, lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G45180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR