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GT20046

CSHL Arabidopsis genetrap mutant lines

Original: GT20046

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20046

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1979671 [Map]; Strand: c
      • AT3G06450.1 - [+] show detail - HCO3- transporter family
        Distance: 0; Region: intron1 (5UTR)
      • AT3G06450.2 - [+] show detail - HCO3- transporter family
        Distance: -83; Region: promoter
      • AT3G06455.1 - [+] show detail - ubiquitin family protein
        Distance: -871; Region: promoter
    Flanking Genome Sequence: GT20046 - 3-prime edge 
    AAGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAC AAAAAGGTGA 
    GAACTTTACA ACACATTTAG TACGGAAAGC TCATAGAAAA ATCAAAAGCT 
    GGCGAGAAGT AAAAAAGTCA TGGGATCTCT GAGCTTGGAT TCAAGAATGA 
    CTGAGAGAGA AAGAAAGAAA AACACTTACC AGAGACAAAT CAGCTCAAAA 
    TGACTAAAGG AACACAACTT TAGAAGACTG AGAGAAAATA GCTTTCGTTT 
    TCTAGGCTTG ACCTCTCTAG TCTCTATACA AGAGCCGTGG GAGATTTTTT 
    ATCAGTTAAA AACTACTGCT GGAGGAGAAA AAAACAACAG TAAAATTGGA 
    TTTTAAAAAA GGGAAGAGAG TGCGATGTGT TGAGATCTGA TGAGAGGAGA 
    GAGATGTCTG TCTCTGTGTC TCTTTGACTC CGGTTTCAGA CAATGCTCGT 
    GATTGGTTTT GTACACTTCT

AT3G06450.1

Model type
Protein coding
Short Description
HCO3- transporter family
Computational Description
HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT3G62270.1); Has 2674 Blast hits to 1402 proteins in 195 species: Archae - 0; Bacteria - 4; Metazoa - 2029; Fungi - 304; Plants - 228; Viruses - 2; Other Eukaryotes - 107 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06450.2

Model type
Protein coding
Short Description
HCO3- transporter family
Computational Description
HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT3G62270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06455.1

Model type
Protein coding
Short Description
ubiquitin family protein
Computational Description
ubiquitin family protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G01000.1); Has 8324 Blast hits to 4012 proteins in 617 species: Archae - 0; Bacteria - 0; Metazoa - 3789; Fungi - 883; Plants - 2106; Viruses - 164; Other Eukaryotes - 1382 (source: NCBI BLink).
Link
InterPro Scan - TAIR