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GT20052

CSHL Arabidopsis genetrap mutant lines

Original: GT20052

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20052

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23356808 [Map]; Strand: w
      • AT3G63210.1 - [+] show detail - Protein of unknown function (DUF581)
        Distance: -1648; Region: intergenic
      • AT3G63220.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 584; Region: intergenic
    Flanking Genome Sequence: GT20052 - 5-prime edge 
    GAAGCATACG TATATGTTTT GACTCCCAAT CCATAGACGT GACTCTTGAT 
    AGATTGATTT CCTTCTAAAC CACCTGACGT AGAGGTTATA AAATAGAATT 
    GGAGTGGAAT CAGCACTAAT CATTCATTTG ATTCGATACT GAAATTTTTA 
    TATTTCTTTC CATTTCATGA TTTCTTTGAT GACTCGCCAT CTTTAATCAT 
    GGTTATTATT AATTCGAAAG TGGCACCGAT ATATTGTGTT TATCAAGGAT 
    ATAGTCATAT CACCCTAATT ACCAAAGATA AAGAAAGCAA ATGAGCAAGA 
    TAATGAGAGG TCCATTTTCT TAAATCATTG CTTCTTTGTC AACATGTCTT 
    AAATCCGAAT CATTACTCTT ATACACTACA AAATACTCCT TAAAGCTTGA 
    ATACCACAAT TTTGTTTTTC TGTTCAATGA CCAAATATCT CCATGTTCAA 
    ACCCATATTG CTCTTTCAGA TTGTTTAAGG CCCAACACAA AATAACTTAT 
    GCAACCTGTC CAAACCCAAC CTGATATCAT TCCCACATAT AGCCCAATCA 
    ATAGACCTAT TTTTTTTTTT TTTTCCCACC CATCCTAAAA TTAATTT

AT3G63210.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF581)
Curator Summary
encodes a novel zinc-finger protein with a proline-rich N-terminus, identical to senescence-associated protein SAG102
Computational Description
Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT3G22550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63220.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G16250.1); Has 6493 Blast hits to 4467 proteins in 250 species: Archae - 4; Bacteria - 460; Metazoa - 4606; Fungi - 8; Plants - 1152; Viruses - 24; Other Eukaryotes - 239 (source: NCBI BLink).
Link
InterPro Scan - TAIR