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GT20100

CSHL Arabidopsis genetrap mutant lines

Original: GT20100

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20100

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7773078 [Map]; Strand: c
      • AT1G22050.1 - [+] show detail - membrane-anchored ubiquitin-fold protein 6 precursor
        Distance: 0; Region: exon3 (3UTR)
      • AT1G22060.1 - [+] show detail - LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 ...
        Distance: 0; Region: exon10 (3UTR)
    Flanking Genome Sequence: GT20100 - 5-prime edge 
    ACAATACCAT TCTTGTTATT TACTGTTGTA TTGAACACAC TTGTATATAT 
    TTATAAAAGA ACCAACCTTC AAGAATCATA CTACATTTTC TCAAGCCATT 
    TTGATTTTTA AAAAATAATA ATTAACAACC ACACACATGG AACCAAATTC 
    TGTAATGAAG ATCTTTTGTT TTCATGCCTA TGCCAATCAT TCTGTACTGA 
    AGGAACTTCT CAAAGCTTGT TTGATGCCAT GGAAGTTGTT CCGTGGAGCA 
    TCATCTAGTG CCATGATCAT GACGGATATA AATCTCTATG ATCCAATTTA 
    CTTGCAGCTA CAAAATGGTG CACACGCAGC GATTCTTCAT CGGTGGATCA 
    TTCTGC

AT1G22050.1

Model type
Protein coding
Short Description
membrane-anchored ubiquitin-fold protein 6 precursor
Computational Description
membrane-anchored ubiquitin-fold protein 6 precursor (MUB6); CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: membrane-anchored ubiquitin-fold protein 5 precursor (TAIR:AT1G77870.1); Has 161 Blast hits to 161 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22060.1

Model type
Protein coding
Computational Description
LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink).
Link
InterPro Scan - TAIR