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GT20112

CSHL Arabidopsis genetrap mutant lines

Original: GT20112

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20112

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17406763 [Map]; Strand: c
      • AT4G36925.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 2313; Region: intergenic
      • AT4G36930.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -7364; Region: intergenic
    Flanking Genome Sequence: GT20112 - 5-prime edge 
    CCCTTATAGA AATCAATTAA ATTAAAATAC AACCCTTTTA TGACCATTAA 
    CATATTAACG AAGTGACGAC TTCCCCGTTT AAATTAGGTT CATCTTAGAT 
    TTAATAATCC AGAAAATTCG GACTTAATAA CTTATATTAC TTTTA

AT4G36925.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24945.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G36930.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary
Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy.
Computational Description
SPATULA (SPT); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G67110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR