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Mutant Lines
GT20116

GT20116

CSHL Arabidopsis genetrap mutant lines

Original: GT20116

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20116

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 1504805 [Map]; Strand: w
- AT1G05190.1 - [+] show detail - Ribosomal protein L6 family
  Distance: -975; Region: promoter
- AT1G05200.2 - [+] show detail - glutamate receptor 3.4
  Distance: -155; Region: promoter
- AT1G05200.1 - [+] show detail - glutamate receptor 3.4
  Distance: -512; Region: promoter

CCTGCTTGTA CCAAAAAGAA AATGCATTAA CTATCTTAAT AAATGATAGT 
TACCCATAAA AGCCAACGTA AAAATTTGAT TCTCGAATAG TATGAGGACA 
CAAGTAAGGC ATGGATACCC CACACCTTGG CCTACGTCTT CACTGACCAC 
TCCAGAAATA GCACTTCAAA ACAAAATTTA CAAAATTTCA TAATGTACCA 
AAAAAATAAG TAATAATAAG GAAGAAAAAA GGAAAAAAGA GAGAGAATAT 
TACGAATTAT TCTTTGCTTG AGCGCAGAAA CAGTTCTTCT TCGACTTCTT 
TTCTCTGTCT TTCTTCTTTA TGCTTAGTGT TCAATCACTC GTTTACTTGT 
GAAGATTATG GATCTCTGAT TAAAGTTTGT TTC

AT1G05190.1

Model type: Protein coding
Short Description: Ribosomal protein L6 family
Computational Description: embryo defective 2394 (emb2394); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, bacterial-type (InterPro:IPR019906), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site (InterPro:IPR002358); BEST Arabidopsis thaliana protein match is: ribosomal protein L6 family protein (TAIR:AT2G18400.1); Has 8498 Blast hits to 8498 proteins in 2848 species: Archae - 226; Bacteria - 5468; Metazoa - 15; Fungi - 189; Plants - 125; Viruses - 0; Other Eukaryotes - 2475 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G05200.1

Model type: Protein coding
Short Description: glutamate receptor 3.4
Curator Summary: member of Putative ligand-gated ion channel subunit family
Computational Description: glutamate receptor 3.4 (GLR3.4); FUNCTIONS IN: protein binding, intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.5 (TAIR:AT2G32390.2); Has 6705 Blast hits to 6546 proteins in 599 species: Archae - 47; Bacteria - 1309; Metazoa - 4441; Fungi - 0; Plants - 637; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G05200.2

Model type: Protein coding
Short Description: glutamate receptor 3.4
Curator Summary: member of Putative ligand-gated ion channel subunit family
Computational Description: glutamate receptor 3.4 (GLR3.4); FUNCTIONS IN: protein binding, intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Extracellular ligand-binding receptor (InterPro:IPR001828), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.5 (TAIR:AT2G32390.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR