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GT20117

CSHL Arabidopsis genetrap mutant lines

Original: GT20117

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20117

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1504799 [Map]; Strand: w
      • AT1G05190.1 - [+] show detail - Ribosomal protein L6 family
        Distance: -969; Region: promoter
      • AT1G05200.2 - [+] show detail - glutamate receptor 3.4
        Distance: -161; Region: promoter
      • AT1G05200.1 - [+] show detail - glutamate receptor 3.4
        Distance: -518; Region: promoter
    Flanking Genome Sequence: GT20117 - 5-prime edge 
    TTCTCCCTGG CTTGTACCAA AAAGAAAAAT GCATTAACTA TCTTAATAAA 
    TGATAGTTAC CCATAAGAGC CAACGTAAAA ATTTGATTCT CGAATAGTAT 
    GAGGACACAA GTAAGGCATG GATACCCCAC ACCTTGGCCT ACGTCTTCAC 
    TGACCACTCC AGAAATAGCA CTTCAAAACA AAATTTACAA AATTTCATAA 
    TGTACCAAAA AAATAAGTAA TAATAAGGAA GAAAAAAGGA AAAAAGAGAG 
    AGAATATTAC GAATTATTCT TTGCTTGAGC GCAGAAACAG TTCTTCTTCG 
    ACTTCTTTTC TCTGTCTTTC TTCTTTATGC TTAGTGTTCA ATCACTCGTT 
    TACTTGTGAA GATTATGGAT CTCTGATTAA AGTTTGTTTC TCGTATTTAT 
    TCCAAGGTTG CTTCTTCTTT TTCTCACTTG CGTATTTTA

AT1G05190.1

Model type
Protein coding
Short Description
Ribosomal protein L6 family
Computational Description
embryo defective 2394 (emb2394); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, bacterial-type (InterPro:IPR019906), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site (InterPro:IPR002358); BEST Arabidopsis thaliana protein match is: ribosomal protein L6 family protein (TAIR:AT2G18400.1); Has 8498 Blast hits to 8498 proteins in 2848 species: Archae - 226; Bacteria - 5468; Metazoa - 15; Fungi - 189; Plants - 125; Viruses - 0; Other Eukaryotes - 2475 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05200.1

Model type
Protein coding
Short Description
glutamate receptor 3.4
Curator Summary
member of Putative ligand-gated ion channel subunit family
Computational Description
glutamate receptor 3.4 (GLR3.4); FUNCTIONS IN: protein binding, intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.5 (TAIR:AT2G32390.2); Has 6705 Blast hits to 6546 proteins in 599 species: Archae - 47; Bacteria - 1309; Metazoa - 4441; Fungi - 0; Plants - 637; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05200.2

Model type
Protein coding
Short Description
glutamate receptor 3.4
Curator Summary
member of Putative ligand-gated ion channel subunit family
Computational Description
glutamate receptor 3.4 (GLR3.4); FUNCTIONS IN: protein binding, intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Extracellular ligand-binding receptor (InterPro:IPR001828), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.5 (TAIR:AT2G32390.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR