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GT20119

CSHL Arabidopsis genetrap mutant lines

Original: GT20119

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20119

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 90376 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT20119 - 5-prime edge
    GTTCGGAGCG AGCAACGTCT CCAAACTCCT CCACCATGTT CCCGAGCACA 
    ATTGACCAGA CGCCGTCGTT TCAATCTGCT TTGAGGCTCC CGTTCGTCTC
    AGAGACCCTA TCTACGGCTG CGTCTCTCAC ATCGTCTCTC TTCAGCAACA
    GGTTAATTAT TCTTTTCATA ACGTTTAATT ATATGATTAG TACTATTTAT
    GATGGGAAAT TGCAACAGTT TTAAGTTGAT CTACTGTCTC TATATCGTCA
    CGTTGATCAT TTTATTTTAA TCATTTTCTA TGTAATTATG TTGTTAACTT
    CTTTTTTTTT TGA

AT4G00220.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational Description
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR