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GT20146

CSHL Arabidopsis genetrap mutant lines

Original: GT20146

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20146

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1958253 [Map]; Strand: w
      • AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G06433.1 - [+] show detail - pseudogene, expressed protein
        Distance: -648; Region: promoter
    Flanking Genome Sequence: GT20146 - 3-prime edge 
    TAAAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAGTGAGGTG 
    TGAAGGAAGA AGACGATGGC GTCAATGTCT CTCTCGTTTT CTTCTTCGCT 
    ATGTTCATCC AGAATCCCCG AAGGTAAGCG TAGGTTTCGT CACAGAGATG 
    TGGGCATCGT TAGATGCGTT TTGGCTGCTT CGAAATCTTC TCCGGGAAGT 
    GTTACGAAGA AGAGGCTTTG GAAAGACGGC GAATTCCCCG GAATCACGGA 
    GCCGGTTAAT CAGAGAAGAA CTCCGATAAA GAATGTGAAG AAGAAACTTG 
    ACAGGAGAAG CAAAGCTAAC GGATGGGTTA ACACCGTCAC TGAAACTTTG 
    TCCGATCTCA TCGCCAAAAA GCAGTGGTTA CAAGCTCTCG AGGTATTTCG 
    ATTTTCTCTC TTCTCGTTCA TGTTTGATTG AATTTGAACT CAATTTTGAA 
    TCACGAAGTA TAATTTAGCT GAAAGATGAT TTTGATTGAA TTGGGTATTT 
    TGTTGATGAT CTTAGGTTTT TGATATGTTG AGGGAACAAA CATTTTATCA 
    ACCAAAGGAA GGAACTTACA TGAAGCTGCT T

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT20146 - 3-prime edge 
    CGGGAATATA CCCGGGAAA

AT3G06430.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06433.1

Model type
Pseudogene
Curator Summary
pseudogene of nodulin MtN3 family protein
Computational Description
pseudogene, expressed protein
Link
InterPro Scan - TAIR