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GT20162

CSHL Arabidopsis genetrap mutant lines

Original: GT20162

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20162

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3124632 [Map]; Strand: c
      • AT3G10114.1 - [+] show detail
        Distance: 4607; Region: intergenic
      • AT3G10116.1 - [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
        Distance: -1391; Region: intergenic
    Flanking Genome Sequence: GT20162 - 5-prime edge 
    TTTCTCCCTG ATTATCTTAA GCGACAAATT AATGACTCTT TTCCATCCAA 
    AGCAAGACGA GGTCTCGGTT TTTGTGAAAC ATTTTCACAT AATAGCAAGC 
    GTTGAGCTCG GCTCAATTTA TAAGTGTGAC TGCGAGCGTT GAGCTCGGAT 
    TAACTGCAAG AATTATTTTG TCTTTTGAAT GTAGCTCGAT GCTAGGTGAA 
    CTAAGCTTTT TGAGTCGGGA CTCAATTTAG AGCTTGACTT CAACAATCAA 
    AAAATGTAAA GCACGAATAC TTATCTTGAT GGGAGAAGAA ATGGCGAGAG 
    GCTGAGCTCA GAATTGCTGT TCCAAAGGTA GAGTTGCATT GTTCGTCTAT 
    GAAGAGTCGT TCTTATCTAG TGATTACCTT GCAGCAGAGA CAGAAATACT 
    GTGATAACTC TTTGTCGAAT TCGACGTTAA AGTGTAGGTT GGTCTTTCTA 
    GAAAGCTGAG CCTCGGGGAT TCGAATTGAT ATGCAGATCG CCATGAAAAT 
    TCTTTTGGAT TGCTAGAAAT TTGCTTTCTA ATTTGGTTGA TCGTGCAGTG 
    AGGATCTGCG TTTCGCTGGT TGCATCTGTT GCAAAGAAAG AGTCATAACC 
    TTCAGTGTAA ATTTCTGATT GAGGCGAGAT TGGCTTCTTT TGAAAGCTAC 
    TTTTCGAGGC

AT3G10114.1

Model type
Pseudogene
Curator Summary
pseudogene of glycosyl hydrolase family 81 protein
Link
InterPro Scan - TAIR

AT3G10116.1

Model type
Protein coding
Short Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Computational Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); Has 64 Blast hits to 64 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR