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GT20177

CSHL Arabidopsis genetrap mutant lines

Original: GT20177

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20177

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 84087 [Map]; Strand: w
      • AT4G00200.1 - [+] show detail - AT hook motif DNA-binding family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT20177 - 5-prime edge 
    CTCTCTGAAG GTCTCGGAGC CATATGATAC GCTGGTGGAA CCTCTGCTCC 
    TATAACACCA CCAGAGCTAA TATTGTCGCT TGTTTCCATT CTCAAATCCT 
    ATCCTTAACT GCAATTACGA GCAAGCCAAA ACTTTAAAAG AGAGTTCATC 
    ATCCAACCAC ATAGCTTCAT AAAAATAGAA ACTTGATTTC CAATTTCAAC 
    AAATGTGGTA ATTTTATAAG CCTGAGACTT AATTTTTGTA AAGCTTCTAC 
    TTTTTACAGT TAGCTACAGA GTTGGAAGCT AATCTTCAAG TATAAAGATG 
    GAATCTTTTG TTCTGTTACA CTGAAAATTC TCAAATTGTA TATCAGAATA 
    GTTTGAACAG GAAAAAAACA CAAGGAGGTT AGAAGCAAAA GTACAAAAAT 
    AATGAGATCT CAGACAAAAG TGTTTAAAAG AAAAACAGAG ACCTGAAGCT 
    TTATGTTTGG TCTCAACACA CTGAAGTTGC TCTATCAGTC AACAGTCAAC 
    GTTCCTCAGC CGAGAATTGA ACTAAACACA AGAACAGATT TCTCCTGGTC 
    AGCTCACGCC GGAGAAGTTC TCAACGGTAT TTTCCGGGAA AAAATTAGAT 
    TTATATGATC CAAACAAGAA GAAGAAAAAA AAACAGAGTG TCCTCAGTCG 
    AAAACAGAGT AGAAAGAAAA CAAAAAACCA GATCGTAAAA AAAAAAAAAA 
    AAAAAAAAA

AT4G00200.1

Model type
Protein coding
Short Description
AT hook motif DNA-binding family protein
Computational Description
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 772 Blast hits to 768 proteins in 34 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 0; Plants - 749; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR