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GT20184

CSHL Arabidopsis genetrap mutant lines

Original: GT20184

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20184

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 211648 [Map]; Strand: c
      • AT5G01540.1 - [+] show detail - lectin receptor kinase a4.1
        Distance: 0; Region: exon1 (CDS)
      • AT5G01542.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT20184 - 5-prime edge
    CCAGAGCTTT CCCGCAACGG AAACCCCTCA TCTGCGTCTG ATGTTTTCGC 
    GTTTGGCGTT TTGTTGTTAG AGATCGTTTG CGGGAGAAAA CCAACGGATT
    CCGGTACCTT CTTCTCTCTC GA

AT5G01540.1

Model type
Protein coding
Short Description
lectin receptor kinase a4.1
Curator Summary
Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.
Computational Description
lectin receptor kinase a4.1 (LECRKA4.1); FUNCTIONS IN: kinase activity; INVOLVED IN: N-terminal protein myristoylation, abscisic acid mediated signaling pathway, response to abscisic acid stimulus, seed germination; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin receptor kinase a4.1 (TAIR:AT5G01550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01542.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G01540
Link
InterPro Scan - TAIR