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Mutant Lines
GT20185

GT20185

CSHL Arabidopsis genetrap mutant lines

Original: GT20185

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20185

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 3511277 [Map]; Strand: w
- AT3G11200.2 - [+] show detail - alfin-like 2
  Distance: -725; Region: promoter
- AT3G11200.1 - [+] show detail - alfin-like 2
  Distance: -650; Region: promoter
- AT3G11210.1 - [+] show detail - SGNH hydrolase-type esterase superfamily protein
  Distance: 0; Region: exon6 (CDS)

TTGGATTGAT TTCCAGTGAA GTGATGGATG CCATTCCGCC TCTTTAACCA 
CTCTTAGTAT CTCTCCCGCT ACTATTTTGC TTCCTTGTGC TGACAAATGA 
ATCCCGTCTC TGTAACAAAC CAGACTATAC CGTTAAAACA TTTCAATGAA 
CATCGTCGAT ACTCCATTCC CGGTTATCGC ATTTGGAAAC TCTGAGAAAG 
TCATATATAT CAAAGGTCTC TCTATATTTC TTCAGAACTC AAAAAATACT 
TACGTGAAGC AAACAGTTTT CCAGTCATCT GCTTTCTGAA AAGTAGAAAA 
GAGATCAACT ACTTCTAGGC CGAGTTCTTG GCACAGCTCT ACACAAGCAT 
CTGAATAAGT CTTGCAGAGG TCGTTTGTGC GGATTACCTC GCTCAAGTAT 
GGGCTTGTGA GAGAAAAAGA AGCACATCTA TATTAATAAG GCCGGAGAGA 
ATAAGGAGAA ACAGAGAGAT AGTGAAGAAA TTCAGGGAAG TTACCTTTGG 
TTCTGGCGAA CTTTAGCCTC ATCCACTGGA GGAGAACTAA GAAATATGAT 
TCGGGTGGAG TCTGAAAGGC TCTGAAACAG AAAATAAA

AT3G11200.1

Model type: Protein coding
Short Description: alfin-like 2
Curator Summary: AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description: alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 1527 Blast hits to 1482 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 758; Fungi - 235; Plants - 458; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G11200.2

Model type: Protein coding
Short Description: alfin-like 2
Curator Summary: AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description: alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G11210.1

Model type: Protein coding
Short Description: SGNH hydrolase-type esterase superfamily protein
Computational Description: SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT2G38180.1); Has 768 Blast hits to 767 proteins in 294 species: Archae - 0; Bacteria - 304; Metazoa - 76; Fungi - 152; Plants - 166; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link: InterPro Scan - TAIR